Artículo
De novo assembly and transcriptome characterization of the freshwater prawn Palaemonetes argentinus : Implications for a detoxification response
Garcia, Carlos Fernando
; Pedrini, Nicolás
; Sánchez Paz, Arturo; Reyna Blanco, Carlos S.; Lavarias, Sabrina Maria Luisa
; Muhlia Almazán, Adriana; Fernandez Gimenez, Analia Veronica
; Laino, Aldana
; de la Re Vega, Enrique; Lukaszewicz, Germán
; López Zavala, Alonso A.; Brieba, Luis G.; Criscitello, Michael F.; Carrasco Miranda, Jesús S.; García Orozco, Karina D.; Ochoa Leyva, Adrian; Rudiño Piñera, Enrique; Sanchez Flores, Alejandro; Sotelo Mundo, Rogerio R.
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Fecha de publicación:
02/2018
Editorial:
Elsevier Science
Revista:
Marine Genomics
ISSN:
1874-7787
Idioma:
Inglés
Tipo de recurso:
Artículo publicado
Clasificación temática:
Resumen
Palaemonetes argentinus, an abundant freshwater prawn species in the northern and central region of Argentina, has been used as a bioindicator of environmental pollutants as it displays a very high sensitivity to pollutants exposure. Despite their extraordinary ecological relevance, a lack of genomic information has hindered a more thorough understanding of the molecular mechanisms potentially involved in detoxification processes of this species. Thus, transcriptomic profiling studies represent a promising approach to overcome the limitations imposed by the lack of extensive genomic resources for P. argentinus, and may improve the understanding of its physiological and molecular response triggered by pollutants. This work represents the first comprehensive transcriptome-based characterization of the non-model species P. argentinus to generate functional genomic annotations and provides valuable resources for future genetic studies. Trinity de novo assembly consisted of 24,738 transcripts with high representation of detoxification (phase I and II), anti-oxidation, osmoregulation pathways and DNA replication and bioenergetics. This crustacean transcriptome provides valuable molecular information about detoxification and biochemical processes that could be applied as biomarkers in further ecotoxicology studies.
Palabras clave:
Palaemonetes Argentinus
,
Shrimp
,
Prawn
,
Transcriptome
,
Detoxification
,
Crustacea
Archivos asociados
Licencia
Identificadores
Colecciones
Articulos(IIMYC)
Articulos de INSTITUTO DE INVESTIGACIONES MARINAS Y COSTERAS
Articulos de INSTITUTO DE INVESTIGACIONES MARINAS Y COSTERAS
Articulos(ILPLA)
Articulos de INST.DE LIMNOLOGIA "DR. RAUL A. RINGUELET"
Articulos de INST.DE LIMNOLOGIA "DR. RAUL A. RINGUELET"
Citación
Garcia, Carlos Fernando; Pedrini, Nicolás; Sánchez Paz, Arturo; Reyna Blanco, Carlos S.; Lavarias, Sabrina Maria Luisa; et al.; De novo assembly and transcriptome characterization of the freshwater prawn Palaemonetes argentinus : Implications for a detoxification response; Elsevier Science; Marine Genomics; 37; 2-2018; 74-81
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