Artículo
Genome and trascriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes
Vlasova, Anna; Capella Gutiérrez, Salvador; Rendón Anaya, Martha; Hernández Oñate, Miguel; Minoche, André E.; Erb, Ionas; Câmara, Francisco; Prieto Barja, Pablo; Corvelo, André; Sanseverino, Walter; Westergaard, Gastón; Dohm, Juliane C.; Pappas Jr., Georgios J.; Saburido Alvarez, Soledad; Kedra, Darek; Gonzalez, Irene; Cozzuto, Luca; Gómez Garrido, Jessica; Aguilar Morón, María A.; Andreu, Nuria; Aguilar, Orlando Mario
; Garcia Mas, Jordi; Zehnsdorf, Maik; Vazquez, Martin Pablo
; Delgado Salinas, Alfonso; Delaye, Luis; Lowy, Ernesto; Mentaberry, Alejandro Nestor
; Vianello Brondani, Rosana P.; García, José Luís; Alioto, Tyler; Sánchez, Federico; Himmelbauer, Heinz; Santalla, Marta; Notredame, Cedric; Gabaldón, Toni; Herrera Estrella, Alfredo; Guigó, Roderic
Fecha de publicación:
25/02/2016
Editorial:
BioMed Central
Revista:
Genome Biology
ISSN:
1474-760X
Idioma:
Inglés
Tipo de recurso:
Artículo publicado
Clasificación temática:
Resumen
We report the genome and the transcription atlas of coding and non-coding genes of a Mesoamerican genotype of common bean (Phaseolus vulgaris L., BAT93). Using a comprehensive phylogenomics analysis, we assessed the past and recent evolution of common bean, and traced the diversification of patterns of gene expression following duplication. We find that successive rounds of gene duplications in legumes have shaped tissue and developmental expression, leading to increased levels of specialization in larger gene families. We also find that many long non-coding RNAs are preferentially expressed in germ-line-related tissues (pods and seeds), suggesting that they play a significant role in fruit development. Our results also suggest that most bean-specific gene family expansions, including resistance gene clusters, predate the split of the Mesoamerican and Andean gene pools.
Palabras clave:
Genome
,
Common Bean
,
Transcriptome
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Colecciones
Articulos(IBBM)
Articulos de INST.DE BIOTECNOLOGIA Y BIOLOGIA MOLECULAR
Articulos de INST.DE BIOTECNOLOGIA Y BIOLOGIA MOLECULAR
Articulos(INGEBI)
Articulos de INST.DE INVEST.EN ING.GENETICA Y BIOL.MOLECULAR "DR. HECTOR N TORRES"
Articulos de INST.DE INVEST.EN ING.GENETICA Y BIOL.MOLECULAR "DR. HECTOR N TORRES"
Citación
Vlasova, Anna; Capella Gutiérrez, Salvador; Rendón Anaya, Martha; Hernández Oñate, Miguel; Minoche, André E.; et al.; Genome and trascriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes; BioMed Central; Genome Biology; 17; 32; 25-2-2016; 1-18
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