Artículo
MIToS.jl: mutual information tools for protein sequence analysis in the Julia language
Fecha de publicación:
11/2016
Editorial:
Oxford University Press
Revista:
Bioinformatics (Oxford, England)
ISSN:
1367-4803
e-ISSN:
1367-4811
Idioma:
Inglés
Tipo de recurso:
Artículo publicado
Clasificación temática:
Resumen
Motivation: MIToS is an environment for mutual information analysis and a framework for protein multiple sequence alignments (MSAs) and protein structures (PDB) management in Julia language. It integrates sequence and structural information through SIFTS, making Pfam MSAs analysis straightforward. MIToS streamlines the implementation of any measure calculated from residue contingency tables and its optimization and testing in terms of protein contact prediction. As an example, we implemented and tested a BLOSUM62-based pseudo-count strategy in mutual information analysis. Availability and Implementation: The software is totally implemented in Julia and supported for Linux, OS X and Windows. It's freely available on GitHub under MIT license: http://mitos.leloir.org.ar .
Palabras clave:
Julia Language
,
Mutual Information
,
Sequence Analysis
,
Structure Analysis
Archivos asociados
Licencia
Identificadores
Colecciones
Articulos(IIBBA)
Articulos de INST.DE INVEST.BIOQUIMICAS DE BS.AS(I)
Articulos de INST.DE INVEST.BIOQUIMICAS DE BS.AS(I)
Citación
Zea, Diego Javier; Anfossi, Diego; Nielsen, Morten; Marino, Cristina Ester; MIToS.jl: mutual information tools for protein sequence analysis in the Julia language; Oxford University Press; Bioinformatics (Oxford, England); 33; 4; 11-2016; 564-565
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