Artículo
A georeferenced rRNA amplicon database of aquatic microbiomes from South America
Metz, Sebastián Darío
; Huber, Maria Paula
; Mateus Barros, Erick; Junger, Pedro C.; de Melo, Michaela; Bagatini, Inessa Lacativa; Izaguirre, Irina
; Câmara dos Reis, Mariana; Llames, Maria Eugenia del Rosario
; Accattatis, Victoria; Quiroga, María Victoria
; Devercelli, Melina
; Schiaffino, María Romina
; Niño García, Juan Pablo; Bastidas Navarro, Marcela Alejandra
; Modenutti, Beatriz Estela
; Vieira, Helena; Saraceno, Martín
; Sabio y García, Carmen Alejandra
; Pereira, Emiliano; González Revello, Alvaro; Piccini, Claudia; Unrein, Fernando
; Alonso, Cecilia; Sarmento, Hugo
Fecha de publicación:
12/2022
Editorial:
Nature Research
Revista:
Scientific Data
ISSN:
2052-4463
Idioma:
Inglés
Tipo de recurso:
Artículo publicado
Clasificación temática:
Resumen
The biogeography of bacterial communities is a key topic in Microbial Ecology. Regarding continental water, most studies are carried out in the northern hemisphere, leaving a gap on microorganism’s diversity patterns on a global scale. South America harbours approximately one third of the world’s total freshwater resources, and is one of these understudied regions. To fill this gap, we compiled 16S rRNA amplicon sequencing data of microbial communities across South America continental water ecosystems, presenting the first database µSudAqua[db]. The database contains over 866 georeferenced samples from 9 different ecoregions with contextual environmental information. For its integration and validation we constructed a curated database (µSudAqua[db.sp]) using samples sequenced by Illumina MiSeq platform with commonly used prokaryote universal primers. This comprised ~60% of the total georeferenced samples of the µSudAqua[db]. This compilation was carried out in the scope of the µSudAqua collaborative network and represents one of the most complete databases of continental water microbial communities from South America.
Palabras clave:
rRNA AMPLICON DATABASE
,
AQUATIC MICROBIOMES
,
SOUTH AMERICA
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Articulos(CCT - LA PLATA)
Articulos de CTRO.CIENTIFICO TECNOL.CONICET - LA PLATA
Articulos de CTRO.CIENTIFICO TECNOL.CONICET - LA PLATA
Citación
Metz, Sebastián Darío; Huber, Maria Paula; Mateus Barros, Erick; Junger, Pedro C.; de Melo, Michaela; et al.; A georeferenced rRNA amplicon database of aquatic microbiomes from South America; Nature Research; Scientific Data; 9; 1; 12-2022; 1-12
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