Artículo
GPU accelerated implementation of density functional theory for hybrid QM/MM simulations
Nitsche, Matias Alejandro
; Ferreria, Manuel; Mocskos, Esteban Eduardo
; González Lebrero, Mariano Camilo
Fecha de publicación:
02/2014
Editorial:
American Chemical Society
Revista:
Journal Of Chemical Theory And Computation
ISSN:
1549-9618
Idioma:
Inglés
Tipo de recurso:
Artículo publicado
Clasificación temática:
Resumen
The hybrid simulation tools (QM/MM) evolved into a fundamental methodology for studying chemical reactivity in complex environments. This paper presents an implementation of electronic structure calculations based on density functional theory. This development is optimized for performing hybrid molecular dynamics simulations by making use of graphic processors (GPU) for the most computationally demanding parts (exchange-correlation terms). The proposed implementation is able to take advantage of modern GPUs achieving acceleration in relevant portions between 20 to 30 times faster than the CPU version. The presented code was extensively tested, both in terms of numerical quality and performance over systems of different size and composition.
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Articulos(IQUIFIB)
Articulos de INST.DE QUIMICA Y FISICO-QUIMICA BIOLOGICAS "PROF. ALEJANDRO C. PALADINI"
Articulos de INST.DE QUIMICA Y FISICO-QUIMICA BIOLOGICAS "PROF. ALEJANDRO C. PALADINI"
Citación
Nitsche, Matias Alejandro; Ferreria, Manuel; Mocskos, Esteban Eduardo; González Lebrero, Mariano Camilo; GPU accelerated implementation of density functional theory for hybrid QM/MM simulations; American Chemical Society; Journal Of Chemical Theory And Computation; 10; 3; 2-2014; 959-967
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