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dc.contributor.author
Flores Sandoval, Eduardo
dc.contributor.author
Romani, Facundo Alihuen
dc.contributor.author
Bowman, John L.
dc.date.available
2019-10-21T17:29:43Z
dc.date.issued
2018-10
dc.identifier.citation
Flores Sandoval, Eduardo; Romani, Facundo Alihuen; Bowman, John L.; Co-expression and transcriptome analysis of marchantia polymorpha transcription factors supports class c arfs as independent actors of an ancient auxin regulatory module; Frontiers Media S.A.; Frontiers in Plant Science; 9; 10-2018; 1-21
dc.identifier.issn
1664-462X
dc.identifier.uri
http://hdl.handle.net/11336/86629
dc.description.abstract
We performed differential gene expression (DGE) and co-expression analyses with genes encoding components of hormonal signaling pathways and the ∼400 annotated transcription factors (TFs) of M. polymorpha across multiple developmental stages of the life cycle. We identify a putative auxin-related co-expression module that has significant overlap with transcripts induced in auxin-treated tissues. Consistent with phylogenetic and functional studies, the class C ARF, MpARF3, is not part of the auxin-related co-expression module and instead is associated with transcripts enriched in gamete-producing gametangiophores. We analyze the Mparf3 and MpmiR160 mutant transcriptomes in the context of coexpression to suggest that MpARF3 may antagonize the reproductive transition via activating the MpMIR11671 and MpMIR529c precursors whose encoded microRNAs target SQUAMOSA-PROMOTER BINDING PROTEIN-LIKE (SPL) transcripts of MpSPL1 and MpSPL2. Both MpSPL genes are part of the MpARF3 co-expression group corroborating their functional significance. We provide evidence of the independence of MpARF3 from the auxin-signaling module and provide new testable hypotheses on the role of auxin-related genes in patterning meristems and differentiation events in liverworts.
dc.format
application/pdf
dc.language.iso
eng
dc.publisher
Frontiers Media S.A.
dc.rights
info:eu-repo/semantics/openAccess
dc.rights.uri
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.subject
AUXIN
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AUXIN RESPONSE FACTORS
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CLASS C ARFS
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CO-EXPRESSION
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MARCHANTIA
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MIR160
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REPRODUCTIVE TRANSITIONS
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TRANSCRIPTOME
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Ciencias de las Plantas, Botánica
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Ciencias Biológicas
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CIENCIAS NATURALES Y EXACTAS
dc.title
Co-expression and transcriptome analysis of marchantia polymorpha transcription factors supports class c arfs as independent actors of an ancient auxin regulatory module
dc.type
info:eu-repo/semantics/article
dc.type
info:ar-repo/semantics/artículo
dc.type
info:eu-repo/semantics/publishedVersion
dc.date.updated
2019-10-18T18:44:05Z
dc.journal.volume
9
dc.journal.pagination
1-21
dc.journal.pais
Suiza
dc.description.fil
Fil: Flores Sandoval, Eduardo. Monash University; Australia
dc.description.fil
Fil: Romani, Facundo Alihuen. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe. Instituto de Agrobiotecnología del Litoral. Universidad Nacional del Litoral. Instituto de Agrobiotecnología del Litoral; Argentina
dc.description.fil
Fil: Bowman, John L.. Monash University; Australia
dc.journal.title
Frontiers in Plant Science
dc.relation.alternativeid
info:eu-repo/semantics/altIdentifier/doi/http://dx.doi.org/10.3389/fpls.2018.01345
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