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dc.contributor.author
Paz, Sergio Alexis  
dc.contributor.author
Abrams, Cameron  
dc.date.available
2019-10-18T15:05:21Z  
dc.date.issued
2018-03  
dc.identifier.citation
Paz, Sergio Alexis; Abrams, Cameron; Testing convergence of different free-energy methods in a simple analytical system with hidden barriers; MDPI Multidisciplinary Digital Publishing Institute; Computation; 6; 2; 3-2018  
dc.identifier.uri
http://hdl.handle.net/11336/86336  
dc.description.abstract
In this work, we study the influence of hidden barriers on the convergence behavior of three free-energy calculation methods: well-tempered metadynamics (WTMD), adaptive-biasing forces (ABF), and on-the-fly parameterization (OTFP). We construct a simple two-dimensional potential-energy surfaces (PES) that allows for an exact analytical result for the free-energy in any one-dimensional order parameter. Then we chose different CV definitions and PES parameters to create three different systems with increasing sampling challenges. We find that all three methods are not greatly affected by the hidden-barriers in the simplest case considered. The adaptive sampling methods show faster sampling while the auxiliary high-friction requirement of OTFP makes it slower for this case. However, a slight change in the CV definition has a strong impact in the ABF and WTMD performance, illustrating the importance of choosing suitable collective variables.  
dc.format
application/pdf  
dc.language.iso
eng  
dc.publisher
MDPI Multidisciplinary Digital Publishing Institute  
dc.rights
info:eu-repo/semantics/openAccess  
dc.rights.uri
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/  
dc.subject
ADAPTIVE-BIASING FORCE ALGORITHM  
dc.subject
METADYNAMICS  
dc.subject
MOLECULAR DYNAMICS  
dc.subject
ON-THE-FLY PARAMETERIZATION  
dc.subject
TEMPERATUREACCELERATION  
dc.subject.classification
Otras Ciencias Químicas  
dc.subject.classification
Ciencias Químicas  
dc.subject.classification
CIENCIAS NATURALES Y EXACTAS  
dc.title
Testing convergence of different free-energy methods in a simple analytical system with hidden barriers  
dc.type
info:eu-repo/semantics/article  
dc.type
info:ar-repo/semantics/artículo  
dc.type
info:eu-repo/semantics/publishedVersion  
dc.date.updated
2019-09-30T18:32:20Z  
dc.identifier.eissn
2079-3197  
dc.journal.volume
6  
dc.journal.number
2  
dc.journal.pais
Alemania  
dc.description.fil
Fil: Paz, Sergio Alexis. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Investigaciones en Físico-química de Córdoba. Universidad Nacional de Córdoba. Facultad de Ciencias Químicas. Instituto de Investigaciones en Físico-química de Córdoba; Argentina. Universidad Nacional de Córdoba. Facultad de Cs.químicas. Departamento de Química Teórica y Computacional; Argentina  
dc.description.fil
Fil: Abrams, Cameron. Drexel University; Estados Unidos  
dc.journal.title
Computation  
dc.relation.alternativeid
info:eu-repo/semantics/altIdentifier/url/http://www.mdpi.com/2079-3197/6/2/27  
dc.relation.alternativeid
info:eu-repo/semantics/altIdentifier/doi/http://dx.doi.org/10.3390/computation6020027