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dc.contributor.author
Paz, Sergio Alexis
dc.contributor.author
Abrams, Cameron
dc.date.available
2019-10-18T15:05:21Z
dc.date.issued
2018-03
dc.identifier.citation
Paz, Sergio Alexis; Abrams, Cameron; Testing convergence of different free-energy methods in a simple analytical system with hidden barriers; MDPI Multidisciplinary Digital Publishing Institute; Computation; 6; 2; 3-2018
dc.identifier.uri
http://hdl.handle.net/11336/86336
dc.description.abstract
In this work, we study the influence of hidden barriers on the convergence behavior of three free-energy calculation methods: well-tempered metadynamics (WTMD), adaptive-biasing forces (ABF), and on-the-fly parameterization (OTFP). We construct a simple two-dimensional potential-energy surfaces (PES) that allows for an exact analytical result for the free-energy in any one-dimensional order parameter. Then we chose different CV definitions and PES parameters to create three different systems with increasing sampling challenges. We find that all three methods are not greatly affected by the hidden-barriers in the simplest case considered. The adaptive sampling methods show faster sampling while the auxiliary high-friction requirement of OTFP makes it slower for this case. However, a slight change in the CV definition has a strong impact in the ABF and WTMD performance, illustrating the importance of choosing suitable collective variables.
dc.format
application/pdf
dc.language.iso
eng
dc.publisher
MDPI Multidisciplinary Digital Publishing Institute
dc.rights
info:eu-repo/semantics/openAccess
dc.rights.uri
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.subject
ADAPTIVE-BIASING FORCE ALGORITHM
dc.subject
METADYNAMICS
dc.subject
MOLECULAR DYNAMICS
dc.subject
ON-THE-FLY PARAMETERIZATION
dc.subject
TEMPERATUREACCELERATION
dc.subject.classification
Otras Ciencias Químicas
dc.subject.classification
Ciencias Químicas
dc.subject.classification
CIENCIAS NATURALES Y EXACTAS
dc.title
Testing convergence of different free-energy methods in a simple analytical system with hidden barriers
dc.type
info:eu-repo/semantics/article
dc.type
info:ar-repo/semantics/artículo
dc.type
info:eu-repo/semantics/publishedVersion
dc.date.updated
2019-09-30T18:32:20Z
dc.identifier.eissn
2079-3197
dc.journal.volume
6
dc.journal.number
2
dc.journal.pais
Alemania
dc.description.fil
Fil: Paz, Sergio Alexis. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Investigaciones en Físico-química de Córdoba. Universidad Nacional de Córdoba. Facultad de Ciencias Químicas. Instituto de Investigaciones en Físico-química de Córdoba; Argentina. Universidad Nacional de Córdoba. Facultad de Cs.químicas. Departamento de Química Teórica y Computacional; Argentina
dc.description.fil
Fil: Abrams, Cameron. Drexel University; Estados Unidos
dc.journal.title
Computation
dc.relation.alternativeid
info:eu-repo/semantics/altIdentifier/url/http://www.mdpi.com/2079-3197/6/2/27
dc.relation.alternativeid
info:eu-repo/semantics/altIdentifier/doi/http://dx.doi.org/10.3390/computation6020027
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