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dc.contributor.author
Jelen, Mateja M.
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Chen, Zigui
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Kocjan, Boštjan J.
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Hošnjak, Lea
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Burt, Felicity J.
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Chan, Paul K.S.
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Chouhy, Diego
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Combrinck, Catharina E.
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Estrade, Christine
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Fiander, Alison
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Garland, Suzanne M.
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Giri, Adriana Angelica
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González, Joaquín Víctor
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Gröning, Arndt
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Hibbitts, Sam
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Luk, Tommy N.M.
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Marinic, Karina
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Matsukura, Toshihiko
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Neumann, Anna
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Oštrbenk, Anja
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Picconi, Maria Alejandra
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Sagadin, Martin
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Sahli, Roland
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Seedat, Riaz Y.
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Seme, Katja
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Severini, Alberto
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Sinchi, Jessica L.
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Smahelova, Jana
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Tabrizi, Sepehr N.
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Tachezy, Ruth
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Faybush, Sarah Tohme
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Uloza, Virgilijus
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Uloziene, Ingrida
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Wong, Yong Wee
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Lepej,Snježana Židovec
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Burk, Robert D.
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Poljak, Mario
dc.date.available
2018-12-18T16:21:56Z
dc.date.issued
2016-06
dc.identifier.citation
Jelen, Mateja M.; Chen, Zigui; Kocjan, Boštjan J.; Hošnjak, Lea; Burt, Felicity J.; et al.; Global Genomic Diversity of Human Papillomavirus 11 Based on 433 Isolates and 78 Complete Genome Sequences; American Society for Microbiology; Journal of Virology; 90; 11; 6-2016; 5503-5513
dc.identifier.issn
0022-538X
dc.identifier.uri
http://hdl.handle.net/11336/66660
dc.description.abstract
Human papillomavirus 11 (HPV11) is an etiological agent of anogenital warts and laryngeal papillomas and is included in the 4-valent and 9-valent prophylactic HPV vaccines. We established the largest collection of globally circulating HPV11 isolates to date and examined the genomic diversity of 433 isolates and 78 complete genomes (CGs) from six continents. The genomic variation within the 2,800-bp E5a-E5b-L1-upstream regulatory region was initially studied in 181/207 (87.4%) HPV11 isolates collected for this study. Of these, the CGs of 30 HPV11 variants containing unique single nucleotide polymorphisms (SNPs), indels (insertions or deletions), or amino acid changes were fully sequenced. A maximum likelihood tree based on the global alignment of 78 HPV11 CGs (30 CGs from our study and 48 CGs from GenBank) revealed two HPV11 lineages (lineages A and B) and four sublineages (sublineages A1, A2, A3, and A4). HPV11 (sub)lineage-specific SNPs within the CG were identified, as well as the 208-bp representative region for CG-based phylogenetic clustering within the partial E2 open reading frame and noncoding region 2. Globally, sublineage A2 was the most prevalent, followed by sublineages A1, A3, and A4 and lineage B.
dc.format
application/pdf
dc.language.iso
eng
dc.publisher
American Society for Microbiology
dc.rights
info:eu-repo/semantics/restrictedAccess
dc.rights.uri
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.subject
Hpv
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Human Papillomavirus
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Hpv11
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Genomic Diversity
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Genetic Diversity
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Complete Genome
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Dna Sequencing
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Worldwide
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Global
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Otras Ciencias Biológicas
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Ciencias Biológicas
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CIENCIAS NATURALES Y EXACTAS
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Bioquímica y Biología Molecular
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Medicina Básica
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CIENCIAS MÉDICAS Y DE LA SALUD
dc.title
Global Genomic Diversity of Human Papillomavirus 11 Based on 433 Isolates and 78 Complete Genome Sequences
dc.type
info:eu-repo/semantics/article
dc.type
info:ar-repo/semantics/artículo
dc.type
info:eu-repo/semantics/publishedVersion
dc.date.updated
2018-07-18T20:45:58Z
dc.journal.volume
90
dc.journal.number
11
dc.journal.pagination
5503-5513
dc.journal.pais
Estados Unidos
dc.journal.ciudad
Washington
dc.description.fil
Fil: Jelen, Mateja M.. University Of Ljubljana. Faculty of Medicine. Institute Of Pathology; Argentina
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Fil: Chen, Zigui. Prince Of Wales Hospital Hong Kong; Hong Kong
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Fil: Kocjan, Boštjan J.. University Of Ljubljana. Faculty Of Medicine; Eslovenia
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Fil: Hošnjak, Lea. University Of Ljubljana. Faculty Of Medicine; Eslovenia
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Fil: Burt, Felicity J.. University Of The Free State. School Of Medicine; Sudáfrica
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Fil: Chan, Paul K.S.. Prince Of Wales Hospital Hong Kong; Hong Kong
dc.description.fil
Fil: Chouhy, Diego. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Rosario. Instituto de Biología Molecular y Celular de Rosario. Universidad Nacional de Rosario. Facultad de Ciencias Bioquímicas y Farmacéuticas. Instituto de Biología Molecular y Celular de Rosario; Argentina
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Fil: Combrinck, Catharina E.. University Of The Free State. School Of Medicine; Sudáfrica
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Fil: Estrade, Christine. University of Lausanne; Suiza
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Fil: Fiander, Alison. Cardiff University; Reino Unido
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Fil: Garland, Suzanne M.. Royal Women's Hospital, Carlton; Australia. Murdoch Children's Research Institute; Australia. University of Melbourne; Australia
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Fil: Giri, Adriana Angelica. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Rosario. Instituto de Biología Molecular y Celular de Rosario. Universidad Nacional de Rosario. Facultad de Ciencias Bioquímicas y Farmacéuticas. Instituto de Biología Molecular y Celular de Rosario; Argentina
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Fil: González, Joaquín Víctor. Dirección Nacional de Instituto de Investigación. Administración Nacional de Laboratorio e Instituto de Salud “Dr. C. G. Malbrán”; Argentina
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Fil: Gröning, Arndt. Medizinisches Versorgungszentrum Wagnerstibbe Für Laboratoriumsmedizin Und Pathologie; Alemania
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Fil: Hibbitts, Sam. Cardiff University; Reino Unido
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Fil: Luk, Tommy N.M.. Prince Of Wales Hospital Hong Kong; Hong Kong. Centre For Health Protection; Hong Kong
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Fil: Marinic, Karina. Dr. Julio C. Perrando Hospital; Argentina
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Fil: Matsukura, Toshihiko. Momate Memorial Laboratory; Japón
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Fil: Neumann, Anna. Medizinisches Versorgungszentrum Wagnerstibbe Für Laboratoriumsmedizin Und Pathologie; Alemania
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Fil: Oštrbenk, Anja. University Of Ljubljana. Faculty Of Medicine; Eslovenia
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Fil: Picconi, Maria Alejandra. Dirección Nacional de Instituto de Investigación. Administración Nacional de Laboratorio e Instituto de Salud “Dr. C. G. Malbrán”; Argentina
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Fil: Sagadin, Martin. University Of Ljubljana. Faculty Of Medicine; Eslovenia
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Fil: Sahli, Roland. University of Lausanne; Suiza
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Fil: Seedat, Riaz Y.. University Of The Free State. School Of Medicine; Sudáfrica
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Fil: Seme, Katja. University Of Ljubljana. Faculty Of Medicine; Eslovenia
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Fil: Severini, Alberto. National Microbiology Laboratory; Canadá
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Fil: Sinchi, Jessica L.. Dr. Julio C. Perrando Hospital; Argentina
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Fil: Smahelova, Jana. Institute Of Hematology And Blood Transfusion; República Checa
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Fil: Tabrizi, Sepehr N.. Royal Women's Hospital, Carlton; Australia. University of Melbourne; Australia. Murdoch Children's Research Institute; Australia
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Fil: Tachezy, Ruth. Institute Of Hematology And Blood Transfusion; República Checa
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Fil: Faybush, Sarah Tohme. National Microbiology Laboratory; Canadá
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Fil: Uloza, Virgilijus. Lithuanian University Of Health Sciences; Lituania
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Fil: Uloziene, Ingrida. Lithuanian University Of Health Sciences; Lituania
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Fil: Wong, Yong Wee. Universiti Kebangsaan Malaysia; Malasia
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Fil: Lepej,Snježana Židovec. University Of Zagreb. School Of Medicine; Croacia
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Fil: Burk, Robert D.. Albert Einstein College Of Medicine Of Yeshiva University; Estados Unidos
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Fil: Poljak, Mario. University Of Ljubljana. Faculty Of Medicine; Eslovenia
dc.journal.title
Journal of Virology
dc.relation.alternativeid
info:eu-repo/semantics/altIdentifier/doi/https://dx.doi.org/10.1128/JVI.03149-15
dc.relation.alternativeid
info:eu-repo/semantics/altIdentifier/url/https://jvi.asm.org/content/90/11/5503


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