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dc.contributor.author
Bidartondo, Martin I.
dc.contributor.author
Bruns, Thomas D.
dc.contributor.author
Blackwell, Meredith
dc.contributor.author
Edwards, Ivan
dc.contributor.author
Taylor, Andy F. S.
dc.contributor.author
Bianchinotti, Maria Virginia
dc.contributor.author
Padamsee, Mahajabeen
dc.contributor.author
Callac, Philippe
dc.contributor.author
Lima, Nelson
dc.contributor.author
White, Merlin M.
dc.contributor.author
Barreau Daly, Camila
dc.contributor.author
Juncai, M. A.
dc.contributor.author
Buyck, Bart
dc.contributor.author
Rabeler, Richard K.
dc.contributor.author
Liles, Mark R.
dc.contributor.author
Estes, Dwayne
dc.contributor.author
Carter, Richard
dc.contributor.author
Herr Jr., J. M.
dc.contributor.author
Chandler, Gregory
dc.contributor.author
Kerekes, Jennifer
dc.contributor.author
Cruse Sanders, Jennifer
dc.contributor.author
Galán Marquez, R.
dc.contributor.author
Horak, Egon
dc.contributor.author
Fitzsimons, Michael
dc.contributor.author
Döering, Heidi
dc.contributor.author
Yao, Su
dc.contributor.author
Hynson, Nicole
dc.contributor.author
Ryberg, Martin
dc.contributor.author
Arnold, A. E.
dc.contributor.author
Hughes, Karen
dc.date.available
2018-05-21T14:45:26Z
dc.date.issued
2008-03-21
dc.identifier.citation
Bidartondo, Martin I.; Bruns, Thomas D.; Blackwell, Meredith; Edwards, Ivan; Taylor, Andy F. S.; et al.; Preserving accuracy in GenBank; American Association for the Advancement of Science; Science; 319; 5870; 21-3-2008; 1616
dc.identifier.issn
0036-8075
dc.identifier.uri
http://hdl.handle.net/11336/45720
dc.description.abstract
GenBank, the public repository for nucleotide and protein sequences, is a critical resource for molecular biology, evolutionary biology, and ecology. While some attention has been drawn to sequence errors, common annotation errors also reduce the value of this database. In fact, for organisms such as fungi, which are notoriously difficult to identify, up to 20% of DNA sequence records may have erroneous lineage designations in GenBank. Gene function annotation in protein sequence databases is similarly error-prone. Because identity and function of new sequences are often determined by bioinformatic analyses, both types of errors are propagated into new accessions, leading to long-term degradation of the quality of the database. Currently, primary sequence data are annotated by the authors of those data, and can only be reannotated by the same authors. This is inefficient and unsustainable over the long term as authors eventually leave the field. Although it is possible to link third-party databases to GenBank records, this is a short-term solution that has little guarantee of permanence. Similarly, the current third-party annotation option in GenBank (TPA) complicates rather than solves the problem by creating an identical record with a new annotation, while leaving the original record unflagged and unlinked to the new record. Since the origin of public zoological and botanical specimen collections, an open system of cumulative annotation has evolved, whereby the original name is retained, but additional opinion is directly appended and used for filing and retrieval. This was needed as new specimens and analyses allowed for reevaluation of older specimens and the original depositors became unavailable. The time has come for the public sequence database to incorporate a community-curated, cumulative annotation process that allows third parties to improve the annotations of sequences when warranted by published peer-reviewed analyses.
dc.format
application/pdf
dc.language.iso
eng
dc.publisher
American Association for the Advancement of Science
dc.rights
info:eu-repo/semantics/openAccess
dc.rights
Atribución-NoComercial-CompartirIgual 2.5 Argentina (CC BY-NC-SA 2.5 AR)
dc.rights.uri
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.subject
Its
dc.subject
Taxonomy
dc.subject
Ecology
dc.subject
Bioinformatics
dc.subject.classification
Otras Ciencias Biológicas
dc.subject.classification
Ciencias Biológicas
dc.subject.classification
CIENCIAS NATURALES Y EXACTAS
dc.title
Preserving accuracy in GenBank
dc.type
info:eu-repo/semantics/article
dc.type
info:ar-repo/semantics/artículo
dc.type
info:eu-repo/semantics/publishedVersion
dc.date.updated
2018-04-18T20:23:49Z
dc.journal.volume
319
dc.journal.number
5870
dc.journal.pagination
1616
dc.journal.pais
Estados Unidos
dc.description.fil
Fil: Bidartondo, Martin I.. Imperial College London; Reino Unido. Royal Botanic Gardens; Reino Unido
dc.description.fil
Fil: Bruns, Thomas D.. University of California at Berkeley; Estados Unidos
dc.description.fil
Fil: Blackwell, Meredith. Louisiana State University; Estados Unidos
dc.description.fil
Fil: Edwards, Ivan. University of Michigan; Estados Unidos
dc.description.fil
Fil: Taylor, Andy F. S.. Swedish University of Agricultural Sciences; Suecia
dc.description.fil
Fil: Bianchinotti, Maria Virginia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Bahía Blanca. Centro de Recursos Naturales Renovables de la Zona Semiárida. Universidad Nacional del Sur. Centro de Recursos Naturales Renovables de la Zona Semiárida; Argentina. Universidad Nacional del Sur; Argentina
dc.description.fil
Fil: Padamsee, Mahajabeen. University of Minnesota; Estados Unidos
dc.description.fil
Fil: Callac, Philippe. Institut National de la Recherche Agronomique; Francia
dc.description.fil
Fil: Lima, Nelson. Universidade do Minho; Portugal
dc.description.fil
Fil: White, Merlin M.. Boise State University; Estados Unidos
dc.description.fil
Fil: Barreau Daly, Camila. Centre National de la Recherche Scientifique; Francia. Institut National de la Recherche Agronomique; Francia
dc.description.fil
Fil: Juncai, M. A.. Chinese Academy of Sciences; República de China
dc.description.fil
Fil: Buyck, Bart. Museum National d'Histoire Naturelle; Francia
dc.description.fil
Fil: Rabeler, Richard K.. University of Michigan; Estados Unidos
dc.description.fil
Fil: Liles, Mark R.. Auburn University; Estados Unidos
dc.description.fil
Fil: Estes, Dwayne. Austin Peay State University; Estados Unidos
dc.description.fil
Fil: Carter, Richard. Valdosta State University; Estados Unidos
dc.description.fil
Fil: Herr Jr., J. M.. University of South Carolina; Estados Unidos
dc.description.fil
Fil: Chandler, Gregory. University of North Carolina; Estados Unidos
dc.description.fil
Fil: Kerekes, Jennifer. University of California at Berkeley; Estados Unidos
dc.description.fil
Fil: Cruse Sanders, Jennifer. Salem College Herbarium; Estados Unidos
dc.description.fil
Fil: Galán Marquez, R.. Universidad de Alcalá; España
dc.description.fil
Fil: Horak, Egon. Zurich Herbarium; Suiza
dc.description.fil
Fil: Fitzsimons, Michael. University of Chicago; Estados Unidos
dc.description.fil
Fil: Döering, Heidi. Royal Botanic Gardens; Reino Unido
dc.description.fil
Fil: Yao, Su. China Center of Industrial Culture Collection; China
dc.description.fil
Fil: Hynson, Nicole. University of California at Berkeley; Estados Unidos
dc.description.fil
Fil: Ryberg, Martin. University Goteborg; Suecia
dc.description.fil
Fil: Arnold, A. E.. University of Arizona; Estados Unidos
dc.description.fil
Fil: Hughes, Karen. University of Tennessee; Estados Unidos
dc.journal.title
Science
dc.relation.isreferencedin
info:eu-repo/semantics/reference/url/http://science.sciencemag.org/content/sci/suppl/2008/03/20/319.5870.1616a.DC1/Bidartondo.SOM.pdf
dc.relation.alternativeid
info:eu-repo/semantics/altIdentifier/url/http://science.sciencemag.org/content/319/5870/1616.1
dc.relation.alternativeid
info:eu-repo/semantics/altIdentifier/doi/http://dx.doi.org/10.1126/science.319.5870.1616a
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