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dc.contributor.author
De Pooter, Daphnis
dc.contributor.author
Appeltans, Ward
dc.contributor.author
Bailly, Nicolas
dc.contributor.author
Bristol, Sky
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Deneudt, Klaas
dc.contributor.author
Eliezer, Menashè
dc.contributor.author
Fujioka, Ei
dc.contributor.author
Giorgetti, Alessandra
dc.contributor.author
Goldstein, Philip
dc.contributor.author
Lewis, Mirtha Noemi
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dc.contributor.author
Lipizer, Marina
dc.contributor.author
Mackay, Kevin
dc.contributor.author
Marin, Maria Rosa
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Moncoiffé, Gwenaëlle
dc.contributor.author
Nikolopoulou, Stamatina
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Provoost, Pieter
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Rauch, Shannon
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Roubicek, Andres
dc.contributor.author
Torres, Carlos
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van de Putte, Anton
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Vandepitte, Leen
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Vanhoorne, Bart
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Vinci, Mateo
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Wambiji, Nina
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Watts, David
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Klein Salas, Eduardo
dc.contributor.author
Hernandez, Francisco
dc.date.available
2018-02-16T17:04:57Z
dc.date.issued
2017-01-09
dc.identifier.citation
De Pooter, Daphnis; Appeltans, Ward; Bailly, Nicolas; Bristol, Sky; Deneudt, Klaas; et al.; Toward a new data standard for combined marine biological and environmental datasets - expanding OBIS beyond species occurrences; Pensoft Publishers; Biodiversity Data Journal; 5; 9-1-2017; e10989
dc.identifier.issn
1314-2828
dc.identifier.uri
http://hdl.handle.net/11336/36621
dc.description.abstract
The Ocean Biogeographic Information System (OBIS) is the world's most comprehensive online, open-access database of marine species distributions. OBIS grows with millions of new species observations every year. Contributions come from a network of hundreds of institutions, projects and individuals with common goals: to build a scientific knowledge base that is open to the public for scientific discovery and exploration and to detect trends and changes that inform society as essential elements in conservation management and sustainable development. Until now, OBIS has focused solely on the collection of biogeographic data (the presence of marine species in space and time) and operated with optimized data flows, quality control procedures and data standards specifically targeted to these data. Based on requirements from the growing OBIS community to manage datasets that combine biological, physical and chemical measurements, the OBIS-ENV-DATA pilot project was launched to develop a proposed standard and guidelines to make sure these combined datasets can stay together and are not, as is often the case, split and sent to different repositories. The proposal in this paper allows for the management of sampling methodology, animal tracking and telemetry data, biological measurements (e.g., body length, percent live cover, ...) as well as environmental measurements such as nutrient concentrations, sediment characteristics or other abiotic parameters measured during sampling to characterize the environment from which biogeographic data was collected. The recommended practice builds on the Darwin Core Archive (DwC-A) standard and on practices adopted by the Global Biodiversity Information Facility (GBIF). It consists of a DwC Event Core in combination with a DwC Occurrence Extension and a proposed enhancement to the DwC MeasurementOrFact Extension. This new structure enables the linkage of measurements or facts - quantitative and qualitative properties - to both sampling events and species occurrences, and includes additional fields for property standardization. We also embrace the use of the new parentEventID DwC term, which enables the creation of a sampling event hierarchy. We believe that the adoption of this recommended practice as a new data standard for managing and sharing biological and associated environmental datasets by IODE and the wider international scientific community would be key to improving the effectiveness of the knowledge base, and will enhance integration and management of critical data needed to understand ecological and biological processes in the ocean, and on land.
dc.format
application/pdf
dc.language.iso
eng
dc.publisher
Pensoft Publishers
dc.rights
info:eu-repo/semantics/openAccess
dc.rights.uri
https://creativecommons.org/licenses/by/2.5/ar/
dc.subject
Darwin Core Archive
dc.subject
Sample Event
dc.subject
Species Occurrence
dc.subject
Environmental Data
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Ecosystem Data
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Telemetry Data
dc.subject
Data Standardisation
dc.subject
Oceanographic Data
dc.title
Toward a new data standard for combined marine biological and environmental datasets - expanding OBIS beyond species occurrences
dc.type
info:eu-repo/semantics/article
dc.type
info:ar-repo/semantics/artículo
dc.type
info:eu-repo/semantics/publishedVersion
dc.date.updated
2017-12-04T18:20:35Z
dc.journal.volume
5
dc.journal.pagination
e10989
dc.journal.pais
Bulgaria
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dc.journal.ciudad
Sofia
dc.description.fil
Fil: De Pooter, Daphnis. Flanders Marine Institute; Bélgica
dc.description.fil
Fil: Appeltans, Ward. UNESCO-IOC; Bélgica
dc.description.fil
Fil: Bailly, Nicolas. Hellenic Centre for Marine Research, MedOBIS; Grecia
dc.description.fil
Fil: Bristol, Sky. United States Geological Survey; Estados Unidos
dc.description.fil
Fil: Deneudt, Klaas. Flanders Marine Institute; Bélgica
dc.description.fil
Fil: Eliezer, Menashè. Istituto Nazionale di Oceanografia e di Geofisica Sperimentale; Italia
dc.description.fil
Fil: Fujioka, Ei. University Of Duke. Nicholas School Of Environment. Duke Marine Lab; Estados Unidos
dc.description.fil
Fil: Giorgetti, Alessandra. Istituto Nazionale di Oceanografia e di Geofisica Sperimentale; Italia
dc.description.fil
Fil: Goldstein, Philip. University of Colorado Museum of Natural History, OBIS; Estados Unidos
dc.description.fil
Fil: Lewis, Mirtha Noemi. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Centro Nacional Patagónico. Centro para el Estudio de Sistemas Marinos; Argentina
dc.description.fil
Fil: Lipizer, Marina. Istituto Nazionale di Oceanografia e di Geofisica Sperimentale; Italia
dc.description.fil
Fil: Mackay, Kevin. National Institute of Water and Atmospheric Research; Nueva Zelanda
dc.description.fil
Fil: Marin, Maria Rosa. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Centro Nacional Patagónico; Argentina
dc.description.fil
Fil: Moncoiffé, Gwenaëlle. British Oceanographic Data Center; Reino Unido
dc.description.fil
Fil: Nikolopoulou, Stamatina. Hellenic Centre for Marine Research, MedOBIS; Grecia
dc.description.fil
Fil: Provoost, Pieter. UNESCO-IOC; Bélgica
dc.description.fil
Fil: Rauch, Shannon. Woods Hole Oceanographic Institution; Estados Unidos
dc.description.fil
Fil: Roubicek, Andres. CSIRO Oceans and Atmosphere; Australia
dc.description.fil
Fil: Torres, Carlos. Universidad Autonoma de Baja California Sur; México
dc.description.fil
Fil: van de Putte, Anton. Royal Belgian Institute for Natural Sciences; Bélgica
dc.description.fil
Fil: Vandepitte, Leen. Flanders Marine Institute; Bélgica
dc.description.fil
Fil: Vanhoorne, Bart. Flanders Marine Institute; Bélgica
dc.description.fil
Fil: Vinci, Mateo. Istituto Nazionale di Oceanografia e di Geofisica Sperimentale; Italia
dc.description.fil
Fil: Wambiji, Nina. Kenya Marine and Fisheries Research Institute; Kenia
dc.description.fil
Fil: Watts, David. CSIRO Oceans and Atmosphere; Australia
dc.description.fil
Fil: Klein Salas, Eduardo. Universidad Simon Bolivar; Venezuela
dc.description.fil
Fil: Hernandez, Francisco. Flanders Marine Institute; Bélgica
dc.journal.title
Biodiversity Data Journal
dc.relation.alternativeid
info:eu-repo/semantics/altIdentifier/doi/http://dx.doi.org/ 10.3897/BDJ.5.e10989
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