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dc.contributor.author
Urbanczyk Wochniak, Ewa
dc.contributor.author
Usadel, Björn
dc.contributor.author
Thimm, Oliver
dc.contributor.author
Nunes Nesi, Adriano
dc.contributor.author
Carrari, Fernando Oscar
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dc.contributor.author
Davy, Marcus
dc.contributor.author
Bläsing, Oliver
dc.contributor.author
Kowalczyk, Magdalena
dc.contributor.author
Weicht, Daniel
dc.contributor.author
Polinceusz, Anna
dc.contributor.author
Meyer, Svenja
dc.contributor.author
Stitt, Mark
dc.contributor.author
Fernie, Alisdair R.
dc.date.available
2024-08-02T10:39:42Z
dc.date.issued
2006-03
dc.identifier.citation
Urbanczyk Wochniak, Ewa; Usadel, Björn; Thimm, Oliver; Nunes Nesi, Adriano; Carrari, Fernando Oscar; et al.; Conversion of MapMan to Allow the Analysis of Transcript Data from Solanaceous Species: Effects of Genetic and Environmental Alterations in Energy Metabolism in the Leaf; Springer; Plant Molecular Biology; 60; 5; 3-2006; 773-792
dc.identifier.issn
0167-4412
dc.identifier.uri
http://hdl.handle.net/11336/241539
dc.description.abstract
The tomato microarray TOM1 offers the possibility to monitor the levels of several thousand transcripts in parallel. The microelements represented on this tomato microarray have been putatively assigned to unigenes, and organised in functional classes using the MapMan ontology (Thimm et al., 2004. Plant J. 37: 914–939). This ontology was initially developed for use with the Arabidopsis ATH1 array, has a low level of redundancy, and can be combined with the MapMan software to provide a biologically structured overview of changes of transcripts, metabolites and enzyme activities. Use of this application is illustrated using three case studies with published or novel TOM1 array data sets for Solanaceous species. Comparison of previously reported data on transcript levels in potato leaves in the middle of the day and the middle of the night identified coordinated changes in the levels of transcripts of genes involved in various metabolic pathways and cellular events. Comparison with diurnal changes of gene expression in Arabidopsis revealed common features, illustrating how MapMan can be used to compare responses in different organisms. Comparison of transcript levels in new experiments performed on the leaves of the cultivated tomato S. lycopersicum and the wild relative S. pennellii revealed a general decrease of levels of transcripts of genes involved in terpene and, phenylpropanoid metabolism as well as chorismate biosynthesis in the crop compared to the wild relative. This matches the recently reported decrease of the levels of secondary metabolites in the latter. In the third case study, new expression array data for two genotypes deficient in TCA cycle enzymes is analysed to show that these genotypes have elevated levels of transcripts associated with photosynthesis. This in part explains the previously documented enhanced rates of photosynthesis in these genotypes. Since the Solanaceous MapMan is intended to be a community resource it will be regularly updated on improvements in tomato gene annotation and transcript profiling resources.
dc.format
application/pdf
dc.language.iso
eng
dc.publisher
Springer
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dc.rights
info:eu-repo/semantics/openAccess
dc.rights.uri
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.subject
Solanum
dc.subject
MapMan
dc.subject
Gene expression
dc.subject.classification
Ciencias de las Plantas, Botánica
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dc.subject.classification
Ciencias Biológicas
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dc.subject.classification
CIENCIAS NATURALES Y EXACTAS
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dc.title
Conversion of MapMan to Allow the Analysis of Transcript Data from Solanaceous Species: Effects of Genetic and Environmental Alterations in Energy Metabolism in the Leaf
dc.type
info:eu-repo/semantics/article
dc.type
info:ar-repo/semantics/artículo
dc.type
info:eu-repo/semantics/publishedVersion
dc.date.updated
2024-07-31T14:16:13Z
dc.journal.volume
60
dc.journal.number
5
dc.journal.pagination
773-792
dc.journal.pais
Alemania
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dc.journal.ciudad
Berlin
dc.description.fil
Fil: Urbanczyk Wochniak, Ewa. Institut Max Planck fur Molekulare Physiologie; Alemania
dc.description.fil
Fil: Usadel, Björn. Institut Max Planck fur Molekulare Physiologie; Alemania
dc.description.fil
Fil: Thimm, Oliver. Institut Max Planck fur Molekulare Physiologie; Alemania. University of York; Reino Unido
dc.description.fil
Fil: Nunes Nesi, Adriano. Institut Max Planck fur Molekulare Physiologie; Alemania
dc.description.fil
Fil: Carrari, Fernando Oscar. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Institut Max Planck fur Molekulare Physiologie; Alemania. Instituto Nacional de Tecnología Agropecuaria. Centro de Investigación en Ciencias Veterinarias y Agronómicas; Argentina
dc.description.fil
Fil: Davy, Marcus. Hort Research Mt Albert; Nueva Zelanda
dc.description.fil
Fil: Bläsing, Oliver. Institut Max Planck fur Molekulare Physiologie; Alemania
dc.description.fil
Fil: Kowalczyk, Magdalena. Uniwersytet Warszawski; Argentina
dc.description.fil
Fil: Weicht, Daniel. Institut Max Planck fur Molekulare Physiologie; Alemania
dc.description.fil
Fil: Polinceusz, Anna. Institut Max Planck fur Molekulare Physiologie; Alemania
dc.description.fil
Fil: Meyer, Svenja. RZPD German Resource Centre for Genome Research; Alemania
dc.description.fil
Fil: Stitt, Mark. Institut Max Planck fur Molekulare Physiologie; Alemania
dc.description.fil
Fil: Fernie, Alisdair R.. Institut Max Planck fur Molekulare Physiologie; Alemania
dc.journal.title
Plant Molecular Biology
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dc.relation.alternativeid
info:eu-repo/semantics/altIdentifier/url/https://link.springer.com/article/10.1007/s11103-005-5772-4
dc.relation.alternativeid
info:eu-repo/semantics/altIdentifier/doi/https://doi.org/10.1007/s11103-005-5772-4
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