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dc.contributor.author
Willing, Eva Maria
dc.contributor.author
Rawat, Vimal
dc.contributor.author
Mandáková, Terezie
dc.contributor.author
Maumus, Florian
dc.contributor.author
James, Geo Velikkakam
dc.contributor.author
Nordström, Karl J. V.
dc.contributor.author
Becker, Claude
dc.contributor.author
Warthmann, Norman
dc.contributor.author
Chica, Claudia
dc.contributor.author
Szarzynska, Bogna
dc.contributor.author
Zytnicki, Matthias
dc.contributor.author
Albani, Maria C.
dc.contributor.author
Kiefer, Christiane
dc.contributor.author
Bergonzi, Sara
dc.contributor.author
Castaings, Loren
dc.contributor.author
Mateos, Julieta Lisa
dc.contributor.author
Berns, Markus C.
dc.contributor.author
Bujdoso, Nora
dc.contributor.author
Piofczyk, Thomas
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Roudier, François
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Carbonero, Pilar
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Paz Ares, Javier
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Davis, Seth J.
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Pecinka, Ales
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Quesneville, Hadi
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Colot, Vincent
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Lysak, Martin A.
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Weigel, Detlef
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Coupland, George
dc.contributor.author
Schneeberger, Korbinian
dc.date.available
2017-06-13T15:06:20Z
dc.date.issued
2015-02
dc.identifier.citation
Willing, Eva Maria; Rawat, Vimal; Mandáková, Terezie; Maumus, Florian; James, Geo Velikkakam; et al.; Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation; Nature Publishing Group; Nature Plants; 64; 11; 2-2015; 1879–1891
dc.identifier.issn
2055-0278
dc.identifier.uri
http://hdl.handle.net/11336/18083
dc.description.abstract
Despite evolutionary conserved mechanisms to silence transposable element activity, there are drastic differences in the abundance of transposable elements even among closely related plant species. We conducted a de novo assembly for the 375 Mb genome of the perennial model plant, Arabis alpina. Analysing this genome revealed long-lasting and recent transposable element activity predominately driven by Gypsy long terminal repeat retrotransposons, which extended the low-recombining pericentromeres and transformed large formerly euchromatic regions into repeat-rich pericentromeric regions. This reduced capacity for long terminal repeat retrotransposon silencing and removal in A. alpina co-occurs with unexpectedly low levels of DNA methylation. Most remarkably, the striking reduction of symmetrical CG and CHG methylation suggests weakened DNA methylation maintenance in A. alpina compared with Arabidopsis thaliana. Phylogenetic analyses indicate a highly dynamic evolution of some components of methylation maintenance machinery that might be related to the unique methylation in A. alpina.
dc.format
application/pdf
dc.language.iso
eng
dc.publisher
Nature Publishing Group
dc.rights
info:eu-repo/semantics/openAccess
dc.rights.uri
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.subject
Arabis Alpina
dc.subject
Genome
dc.subject.classification
Ciencias de las Plantas, Botánica
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Ciencias Biológicas
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CIENCIAS NATURALES Y EXACTAS
dc.title
Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation
dc.type
info:eu-repo/semantics/article
dc.type
info:ar-repo/semantics/artículo
dc.type
info:eu-repo/semantics/publishedVersion
dc.date.updated
2016-12-16T17:25:15Z
dc.journal.volume
64
dc.journal.number
11
dc.journal.pagination
1879–1891
dc.journal.pais
Reino Unido
dc.description.fil
Fil: Willing, Eva Maria. Max Planck Institute for Plant Breeding Research; Alemania
dc.description.fil
Fil: Rawat, Vimal. Central European Institute of Technology; República Checa
dc.description.fil
Fil: Mandáková, Terezie. Central European Institute of Technology; República Checa
dc.description.fil
Fil: Maumus, Florian. INRA. Research Unit in Genomics; Francia
dc.description.fil
Fil: James, Geo Velikkakam. Max Planck Institute for Plant Breeding Research; Alemania
dc.description.fil
Fil: Nordström, Karl J. V.. Max Planck Institute for Plant Breeding Research; Alemania
dc.description.fil
Fil: Becker, Claude. Max Planck Institute for Developmental Biology; Alemania
dc.description.fil
Fil: Warthmann, Norman. Max Planck Institute for Developmental Biology; Alemania. The Australian National University; Australia
dc.description.fil
Fil: Chica, Claudia. Centre National de la Recherche Scientifique; Francia
dc.description.fil
Fil: Szarzynska, Bogna. Centre National de la Recherche Scientifique; Francia
dc.description.fil
Fil: Zytnicki, Matthias. Max Planck Institute for Developmental Biology; Alemania
dc.description.fil
Fil: Albani, Maria C.. Max Planck Institute for Plant Breeding Research; Alemania
dc.description.fil
Fil: Kiefer, Christiane. Max Planck Institute for Plant Breeding Research; Alemania
dc.description.fil
Fil: Bergonzi, Sara. Max Planck Institute for Plant Breeding Research; Alemania
dc.description.fil
Fil: Castaings, Loren. Max Planck Institute for Plant Breeding Research; Alemania
dc.description.fil
Fil: Mateos, Julieta Lisa. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Instituto de Investigaciones Bioquímicas de Buenos Aires. Fundación Instituto Leloir. Instituto de Investigaciones Bioquímicas de Buenos Aires; Argentina. Max Planck Institute for Plant Breeding Research; Alemania
dc.description.fil
Fil: Berns, Markus C.. Max Planck Institute for Plant Breeding Research; Alemania
dc.description.fil
Fil: Bujdoso, Nora. Max Planck Institute for Plant Breeding Research; Alemania
dc.description.fil
Fil: Piofczyk, Thomas. Max Planck Institute for Plant Breeding Research; Alemania
dc.description.fil
Fil: Roudier, François. Centre National de la Recherche Scientifique; Francia
dc.description.fil
Fil: Carbonero, Pilar. Universidad Politécnica de Madrid; España
dc.description.fil
Fil: Paz Ares, Javier. Consejo Superior de Investigaciones Cientificas; España
dc.description.fil
Fil: Davis, Seth J.. Max Planck Institute for Plant Breeding Research; Alemania
dc.description.fil
Fil: Pecinka, Ales. Max Planck Institute for Plant Breeding Research; Alemania
dc.description.fil
Fil: Quesneville, Hadi. INRA. Research Unit in Genomics; Francia
dc.description.fil
Fil: Colot, Vincent. Centre National de la Recherche Scientifique; Francia
dc.description.fil
Fil: Lysak, Martin A.. Central European Institute of Technology; República Checa
dc.description.fil
Fil: Weigel, Detlef. Max Planck Institute for Developmental Biology; Alemania
dc.description.fil
Fil: Coupland, George. Max Planck Institute for Plant Breeding Research; Alemania
dc.description.fil
Fil: Schneeberger, Korbinian. Max Planck Institute for Plant Breeding Research; Alemania
dc.journal.title
Nature Plants
dc.relation.alternativeid
info:eu-repo/semantics/altIdentifier/url/http://www.nature.com/articles/nplants201423
dc.relation.alternativeid
info:eu-repo/semantics/altIdentifier/doi/http://dx.doi.org/10.1038/nplants.2014.23
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