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dc.contributor.author
Piovesan, Damiano
dc.contributor.author
Necci, Marco
dc.contributor.author
Escobedo, Nahuel Abel
dc.contributor.author
Monzon, Alexander Miguel
dc.contributor.author
Viczián, András
dc.contributor.author
Mičetić, Ivan
dc.contributor.author
Quaglia, Federica
dc.contributor.author
Paladin, Lisanna
dc.contributor.author
Ramasamy, Pathmanaban
dc.contributor.author
Dosztányi, Zsuzsanna
dc.contributor.author
Vranken, Wim F.
dc.contributor.author
Davey, Norman E.
dc.contributor.author
Parisi, Gustavo Daniel
dc.contributor.author
Fuxreiter, Monika
dc.contributor.author
Tosatto, Silvio C. E.
dc.date.available
2022-10-11T14:41:56Z
dc.date.issued
2021-01
dc.identifier.citation
Piovesan, Damiano; Necci, Marco; Escobedo, Nahuel Abel; Monzon, Alexander Miguel; Viczián, András; et al.; MobiDB: Intrinsically disordered proteins in 2021; Oxford University Press; Nucleic Acids Research; 49; D1; 1-2021; 361-367
dc.identifier.issn
0305-1048
dc.identifier.uri
http://hdl.handle.net/11336/172503
dc.description.abstract
The MobiDB database (URL: https://mobidb.org/) provides predictions and annotations for intrinsically disordered proteins. Here, we report recent developments implemented in MobiDB version 4, regarding the database format, with novel types of annotations and an improved update process. The new website includes a re-designed user interface, a more effective search engine and advanced API for programmatic access. The new database schema gives more flexibility for the users, as well as simplifying the maintenance and updates. In addition, the new entry page provides more visualisation tools including customizable feature viewer and graphs of the residue contact maps. MobiDB v4 annotates the binding modes of disordered proteins, whether they undergo disorder-to-order transitions or remain disordered in the bound state. In addition, disordered regions undergoing liquid-liquid phase separation or post-translational modifications are defined. The integrated information is presented in a simplified interface, which enables faster searches and allows large customized datasets to be downloaded in TSV, Fasta or JSON formats. An alternative advanced interface allows users to drill deeper into features of interest. A new statistics page provides information at database and proteome levels. The new MobiDB version presents state-of-the-art knowledge on disordered proteins and improves data accessibility for both computational and experimental users.
dc.format
application/pdf
dc.language.iso
eng
dc.publisher
Oxford University Press
dc.rights
info:eu-repo/semantics/openAccess
dc.rights.uri
https://creativecommons.org/licenses/by/2.5/ar/
dc.subject
DISORDER
dc.subject
Database
dc.subject
Prediction
dc.subject
UNIPROT
dc.subject.classification
Otras Ciencias Naturales y Exactas
dc.subject.classification
Otras Ciencias Naturales y Exactas
dc.subject.classification
CIENCIAS NATURALES Y EXACTAS
dc.title
MobiDB: Intrinsically disordered proteins in 2021
dc.type
info:eu-repo/semantics/article
dc.type
info:ar-repo/semantics/artículo
dc.type
info:eu-repo/semantics/publishedVersion
dc.date.updated
2022-10-03T17:54:00Z
dc.identifier.eissn
1362-4962
dc.journal.volume
49
dc.journal.number
D1
dc.journal.pagination
361-367
dc.journal.pais
Reino Unido
dc.journal.ciudad
Oxford
dc.description.fil
Fil: Piovesan, Damiano. Università di Padova; Italia
dc.description.fil
Fil: Necci, Marco. Università di Padova; Italia
dc.description.fil
Fil: Escobedo, Nahuel Abel. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad Nacional de Quilmes. Departamento de Ciencia y Tecnología; Argentina
dc.description.fil
Fil: Monzon, Alexander Miguel. Università di Padova; Italia
dc.description.fil
Fil: Viczián, András. Università di Padova; Italia
dc.description.fil
Fil: Mičetić, Ivan. Università di Padova; Italia
dc.description.fil
Fil: Quaglia, Federica. Università di Padova; Italia
dc.description.fil
Fil: Paladin, Lisanna. Università di Padova; Italia
dc.description.fil
Fil: Ramasamy, Pathmanaban. Vrije Unviversiteit Brussel; Bélgica. University of Ghent; Bélgica. Interuniversity Institute of Bioinformatics in Brussels; Bélgica
dc.description.fil
Fil: Dosztányi, Zsuzsanna. Eötvös Loránd University; Hungría
dc.description.fil
Fil: Vranken, Wim F.. Vrije Unviversiteit Brussel; Bélgica. Interuniversity Institute of Bioinformatics in Brussels; Bélgica
dc.description.fil
Fil: Davey, Norman E.. The Institute Of Cancer Research; Reino Unido
dc.description.fil
Fil: Parisi, Gustavo Daniel. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad Nacional de Quilmes. Departamento de Ciencia y Tecnología; Argentina
dc.description.fil
Fil: Fuxreiter, Monika. Università di Padova; Italia
dc.description.fil
Fil: Tosatto, Silvio C. E.. Università di Padova; Italia
dc.journal.title
Nucleic Acids Research
dc.relation.alternativeid
info:eu-repo/semantics/altIdentifier/url/https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gkaa1058/6006190
dc.relation.alternativeid
info:eu-repo/semantics/altIdentifier/doi/http://dx.doi.org/10.1093/nar/gkaa1058
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