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dc.contributor.author
Esquerre, Damián
dc.contributor.author
Keogh, J. Scott
dc.contributor.author
Demangel, Diego
dc.contributor.author
Morando, Mariana
dc.contributor.author
Avila, Luciano Javier
dc.contributor.author
Sites, Jack W.
dc.contributor.author
Ferri Yañez, Francisco
dc.contributor.author
Leaché, Adam
dc.date.available
2022-04-04T13:11:26Z
dc.date.issued
2021-07
dc.identifier.citation
Esquerre, Damián; Keogh, J. Scott; Demangel, Diego; Morando, Mariana; Avila, Luciano Javier; et al.; Rapid radiation and rampant reticulation: Phylogenomics of South American Liolaemus lizards; Oxford University Press; Systematic Biology; 71; 2; 7-2021; 286-300
dc.identifier.issn
1063-5157
dc.identifier.uri
http://hdl.handle.net/11336/154239
dc.description.abstract
Understanding the factors that cause heterogeneity among gene trees can increase the accuracy of species trees. Discordant signals across the genome are commonly produced by incomplete lineage sorting (ILS) and introgression, which in turn can result in reticulate evolution. Species tree inference using the multispecies coalescent is designed to deal with ILS and is robust to low levels of introgression, but extensive introgression violates the fundamental assumption that relationships are strictly bifurcating. In this study, we explore the phylogenomics of the iconic Liolaemus subgenus of South American lizards, a group of over 100 species mostly distributed in and around the Andes mountains. Using mitochondrial DNA (mtDNA) and genome-wide restriction site-associated DNA sequencing (RADseq; nDNA hereafter), we inferred a time-calibrated mtDNA gene tree, nDNA species trees, and phylogenetic networks. We found high levels of discordance between mtDNA and nDNA, which we attribute in part to extensive ILS resulting from rapid diversification. These data also reveal extensive and deep introgression, which combined with rapid diversification, explain the high level of phylogenetic discordance. We discuss these findings in the context of Andean orogeny and glacial cycles that fragmented, expanded, and contracted species distributions. Finally, we use the new phylogeny to resolve long-standing taxonomic issues in one of the most studied lizard groups in the New World.[Andes; ddRADSeq; introgression; lizards; mtDNA; reptiles; SNPs.]
dc.format
application/pdf
dc.language.iso
eng
dc.publisher
Oxford University Press
dc.rights
info:eu-repo/semantics/restrictedAccess
dc.rights.uri
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.subject
SNPS
dc.subject
INTROGRESSION
dc.subject
MTDNA
dc.subject
LIZARDS
dc.subject
REPTILES
dc.subject
ANDES
dc.subject
ddRADSeq
dc.subject.classification
Zoología, Ornitología, Entomología, Etología
dc.subject.classification
Ciencias Biológicas
dc.subject.classification
CIENCIAS NATURALES Y EXACTAS
dc.title
Rapid radiation and rampant reticulation: Phylogenomics of South American Liolaemus lizards
dc.type
info:eu-repo/semantics/article
dc.type
info:ar-repo/semantics/artículo
dc.type
info:eu-repo/semantics/publishedVersion
dc.date.updated
2021-07-30T18:02:26Z
dc.identifier.eissn
1076-836X
dc.journal.volume
71
dc.journal.number
2
dc.journal.pagination
286-300
dc.journal.pais
Reino Unido
dc.journal.ciudad
Oxford
dc.description.fil
Fil: Esquerre, Damián. Australian National University; Australia
dc.description.fil
Fil: Keogh, J. Scott. Australian National University; Australia
dc.description.fil
Fil: Demangel, Diego. No especifíca;
dc.description.fil
Fil: Morando, Mariana. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Centro Nacional Patagónico. Instituto Patagónico para el Estudio de los Ecosistemas Continentales; Argentina
dc.description.fil
Fil: Avila, Luciano Javier. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Centro Nacional Patagónico. Instituto Patagónico para el Estudio de los Ecosistemas Continentales; Argentina
dc.description.fil
Fil: Sites, Jack W.. University Brigham Young; Estados Unidos
dc.description.fil
Fil: Ferri Yañez, Francisco. Consejo Superior de Investigaciones Científicas; España
dc.description.fil
Fil: Leaché, Adam. University of Washington; Estados Unidos
dc.journal.title
Systematic Biology
dc.relation.alternativeid
info:eu-repo/semantics/altIdentifier/url/https://academic.oup.com/sysbio/advance-article-abstract/doi/10.1093/sysbio/syab058/6321249?redirectedFrom=fulltext
dc.relation.alternativeid
info:eu-repo/semantics/altIdentifier/doi/https://doi.org/10.1093/sysbio/syab058
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