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dc.contributor.author
Costa, Zirlane Portugal
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Varani, Alessandro Mello
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Cauz-Santos, Luiz Augusto
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Sader, Mariela Analía
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Giopatto, Helena Augusto
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Zirpoli, Bruna
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Callot, Caroline
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Cauet, Stephane
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Marande, William
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Souza Cardoso, Jessica Luana
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Pinheiro, Daniel Guariz
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Kitajima, João Paulo
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Dornelas, Marcelo Carnier
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Harand, Andrea Pedrosa
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Berges, Helene
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Monteiro-Vitorello, Claudia Barros
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Carneiro Vieira, Maria Lucia
dc.date.available
2022-01-19T16:17:26Z
dc.date.issued
2021-11
dc.identifier.citation
Costa, Zirlane Portugal; Varani, Alessandro Mello; Cauz-Santos, Luiz Augusto; Sader, Mariela Analía; Giopatto, Helena Augusto; et al.; A genome sequence resource for the genus Passiflora, the genome of the wild diploid species Passiflora organensis; John Wiley and Sons Inc; Plant Genome; 14; 3; 11-2021; 1-22
dc.identifier.uri
http://hdl.handle.net/11336/150333
dc.description.abstract
The genus Passiflora comprises a large group of plants popularly known as passionfruit, much appreciated for their exotic flowers and edible fruits. The species (∼500) are morphologically variable (e.g., growth habit, size, and color of flowers) and are adapted to distinct tropical ecosystems. In this study, we generated the genome of the wild diploid species Passiflora organensis Gardner by adopting a hybrid assembly approach. Passiflora organensis has a small genome of 259 Mbp and a heterozygosity rate of 81%, consistent with its reproductive system. Most of the genome sequences could be integrated into its chromosomes with cytogenomic markers (satellite DNA) as references. The repeated sequences accounted for 58.55% of the total DNA analyzed, and the Tekay lineage was the prevalent retrotransposon. In total, 25,327 coding genes were predicted. Passiflora organensis retains 5,609 singletons and 15,671 gene families. We focused on the genes potentially involved in the locus determining self-incompatibility and the MADS-box gene family, allowing us to infer expansions and contractions within specific subfamilies. Finally, we recovered the organellar DNA. Structural rearrangements and two mitoviruses, besides relics of other mobile elements, were found in the chloroplast and mt-DNA molecules, respectively. This study presents the first draft genome assembly of a wild Passiflora species, providing a valuable sequence resource for genomic and evolutionary studies on the genus, and support for breeding cropped passionfruit species.
dc.format
application/pdf
dc.language.iso
eng
dc.publisher
John Wiley and Sons Inc
dc.rights
info:eu-repo/semantics/restrictedAccess
dc.rights
Atribución-NoComercial-CompartirIgual 2.5 Argentina (CC BY-NC-SA 2.5 AR)
dc.rights.uri
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.subject
Genome sequencing
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Self-incompatibility genes
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MADS-box gene family
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Organelle DNAs
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Ciencias de las Plantas, Botánica
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Ciencias Biológicas
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CIENCIAS NATURALES Y EXACTAS
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dc.title
A genome sequence resource for the genus Passiflora, the genome of the wild diploid species Passiflora organensis
dc.type
info:eu-repo/semantics/article
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info:ar-repo/semantics/artículo
dc.type
info:eu-repo/semantics/publishedVersion
dc.date.updated
2021-10-27T13:33:40Z
dc.identifier.eissn
1940-3372
dc.journal.volume
14
dc.journal.number
3
dc.journal.pagination
1-22
dc.journal.pais
Estados Unidos
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Fil: Costa, Zirlane Portugal. Universidade do Sao Paulo. Escola Superior de Agricultura Luiz de Queiroz; Brasil
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Fil: Varani, Alessandro Mello. Universidade Estadual Paulista Julio de Mesquita Filho; Brasil
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Fil: Cauz-Santos, Luiz Augusto. Universidad de Viena; Austria
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Fil: Sader, Mariela Analía. Universidade Federal de Pernambuco; Brasil. Instituto Nacional de Tecnología Agropecuaria. Centro de Investigación en Ciencias Veterinarias y Agronómicas. Instituto de Fitopatología y Fisiología Vegetal; Argentina
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Fil: Giopatto, Helena Augusto. Universidade Estadual de Campinas; Brasil
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Fil: Zirpoli, Bruna. Universidade Federal de Pernambuco; Brasil
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Fil: Callot, Caroline. Institut National de la Recherche Agronomique. Centre National de Ressources Génomique Végétales; Francia
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Fil: Cauet, Stephane. Institut National de la Recherche Agronomique. Centre National de Ressources Génomique Végétales; Francia
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Fil: Marande, William. Institut National de la Recherche Agronomique. Centre National de Ressources Génomique Végétales; Francia
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Fil: Souza Cardoso, Jessica Luana. Universidade de Sao Paulo; Brasil
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Fil: Pinheiro, Daniel Guariz. Universidade Estadual Paulista Júlio de Mesquita Filho; Brasil
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Fil: Kitajima, João Paulo. Mendelics Análise Genômica AS; Brasil
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Fil: Dornelas, Marcelo Carnier. Universidade Estadual de Campinas; Brasil
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Fil: Harand, Andrea Pedrosa. Universidade Federal de Pernambuco; Brasil
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Fil: Berges, Helene. Mendelics Análise Genômica AS; Brasil
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Fil: Monteiro-Vitorello, Claudia Barros. Universidade de Sao Paulo; Brasil
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Fil: Carneiro Vieira, Maria Lucia. Universidade de Sao Paulo; Brasil
dc.journal.title
Plant Genome
dc.relation.alternativeid
info:eu-repo/semantics/altIdentifier/doi/http://dx.doi.org/10.1002/tpg2.20117
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info:eu-repo/semantics/altIdentifier/url/https://acsess.onlinelibrary.wiley.com/doi/10.1002/tpg2.20117
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