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dc.contributor.author
Chang, Eric
dc.contributor.author
Fu, Cong
dc.contributor.author
Coon, Steven L.
dc.contributor.author
Alon, Shahar
dc.contributor.author
Bozinoski, Marjan
dc.contributor.author
Breymaier, Matthew
dc.contributor.author
Bustos, Diego Martin
dc.contributor.author
Clokie, Samuel J.
dc.contributor.author
Gothilf, Yoav
dc.contributor.author
Esnault, Caroline
dc.contributor.author
Iuvone, P. Michael
dc.contributor.author
Mason, Christopher E.
dc.contributor.author
Ochocinska, Margaret J.
dc.contributor.author
Tovin, Adi
dc.contributor.author
Wang, Charles
dc.contributor.author
Xu, Pinxian
dc.contributor.author
Zhu, Jinhang
dc.contributor.author
Dale, Ryan
dc.contributor.author
Klein, David C.
dc.date.available
2021-09-30T12:44:28Z
dc.date.issued
2020-06
dc.identifier.citation
Chang, Eric; Fu, Cong; Coon, Steven L.; Alon, Shahar; Bozinoski, Marjan; et al.; Resource: A multi‐species multi‐timepoint transcriptome database and webpage for the pineal gland and retina; Wiley Blackwell Publishing, Inc; Journal of Pineal Research; 69; 3; 6-2020; 1-28
dc.identifier.issn
0742-3098
dc.identifier.uri
http://hdl.handle.net/11336/142038
dc.description.abstract
The website and database https://snengs.nichd.nih.gov provides RNA sequencing data from multi-species analysis of the pineal glands from zebrafish (Danio rerio), chicken (White Leghorn), rat (Rattus novegicus), mouse (Mus musculus), rhesus macaque (Macaca mulatta), and human (Homo sapiens); in most cases, retinal data are also included along with results of the analysis of a mixture of RNA from tissues. Studies cover day and night conditions; in addition, a time series over multiple hours, a developmental time series and pharmacological experiments on rats are included. The data have been uniformly re-processed using the latest methods and assemblies to allow for comparisons between experiments and to reduce processing differences. The website presents search functionality, graphical representations, Excel tables, and track hubs of all data for detailed visualization in the UCSC Genome Browser. As more data are collected from investigators and improved genomes become available in the future, the website will be updated. This database is in the public domain and elements can be reproduced by citing the URL and this report. This effort makes the results of 21st century transcriptome profiling widely available in a user-friendly format that is expected to broadly influence pineal research.
dc.format
application/pdf
dc.language.iso
eng
dc.publisher
Wiley Blackwell Publishing, Inc
dc.rights
info:eu-repo/semantics/openAccess
dc.rights.uri
https://creativecommons.org/licenses/by/2.5/ar/
dc.subject
BIOLOGICAL RHYTHMS
dc.subject
NEUROTRANSCRIPTOMICS
dc.subject
PINEAL
dc.subject
RETINA
dc.subject
RNA-SEQ
dc.subject
TRANSCRIPTOME
dc.subject
WEBPAGE
dc.subject.classification
Bioquímica y Biología Molecular
dc.subject.classification
Ciencias Biológicas
dc.subject.classification
CIENCIAS NATURALES Y EXACTAS
dc.title
Resource: A multi‐species multi‐timepoint transcriptome database and webpage for the pineal gland and retina
dc.type
info:eu-repo/semantics/article
dc.type
info:ar-repo/semantics/artículo
dc.type
info:eu-repo/semantics/publishedVersion
dc.date.updated
2021-09-06T20:03:53Z
dc.journal.volume
69
dc.journal.number
3
dc.journal.pagination
1-28
dc.journal.pais
Reino Unido
dc.journal.ciudad
Londres
dc.description.fil
Fil: Chang, Eric. National Instituto of Child Health & Human Development; Estados Unidos
dc.description.fil
Fil: Fu, Cong. National Instituto of Child Health & Human Development; Estados Unidos
dc.description.fil
Fil: Coon, Steven L.. National Instituto of Child Health & Human Development; Estados Unidos
dc.description.fil
Fil: Alon, Shahar. No especifíca;
dc.description.fil
Fil: Bozinoski, Marjan. No especifíca;
dc.description.fil
Fil: Breymaier, Matthew. National Instituto of Child Health & Human Development; Estados Unidos
dc.description.fil
Fil: Bustos, Diego Martin. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mendoza. Instituto de Histología y Embriología de Mendoza Dr. Mario H. Burgos. Universidad Nacional de Cuyo. Facultad de Ciencias Médicas. Instituto de Histología y Embriología de Mendoza Dr. Mario H. Burgos; Argentina
dc.description.fil
Fil: Clokie, Samuel J.. National Instituto of Child Health & Human Development; Estados Unidos
dc.description.fil
Fil: Gothilf, Yoav. No especifíca;
dc.description.fil
Fil: Esnault, Caroline. National Instituto of Child Health & Human Development; Estados Unidos
dc.description.fil
Fil: Iuvone, P. Michael. Emory University School of Medicine; Estados Unidos
dc.description.fil
Fil: Mason, Christopher E.. No especifíca;
dc.description.fil
Fil: Ochocinska, Margaret J.. National Instituto of Child Health & Human Development; Estados Unidos
dc.description.fil
Fil: Tovin, Adi. No especifíca;
dc.description.fil
Fil: Wang, Charles. Loma Linda University; Estados Unidos
dc.description.fil
Fil: Xu, Pinxian. No especifíca;
dc.description.fil
Fil: Zhu, Jinhang. No especifíca;
dc.description.fil
Fil: Dale, Ryan. National Instituto of Child Health & Human Development; Estados Unidos
dc.description.fil
Fil: Klein, David C.. National Instituto of Child Health & Human Development; Estados Unidos
dc.journal.title
Journal of Pineal Research
dc.relation.alternativeid
info:eu-repo/semantics/altIdentifier/url/https://onlinelibrary.wiley.com/doi/abs/10.1111/jpi.12673
dc.relation.alternativeid
info:eu-repo/semantics/altIdentifier/doi/http://dx.doi.org/10.1111/jpi.12673
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