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dc.contributor.author
Panfilio, Kristen A.
dc.contributor.author
Vargas Jentzsch, Iris M.
dc.contributor.author
Benoit, Joshua B.
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Erezyilmaz, Deniz
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Suzuki, Yuichiro
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Colella, Stefano
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Robertson, Hugh M.
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Poelchau, Monica F.
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Waterhouse, Robert M.
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Ioannidis, Panagiotis
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Weirauch, Matthew T.
dc.contributor.author
Hughes, Daniel S. T.
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Murali, Shwetha C.
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Werren, John H.
dc.contributor.author
Jacobs, Chris G. C.
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Duncan, Elizabeth J.
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Armisén, David
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Vreede, Barbara M. I.
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Baa-Puyoulet, Patrice
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Berger, Chloé S.
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Chang, Chun Che
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Chao, Hsu
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Chen, Mei Ju M.
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Chen, Yen Ta
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Childers, Christopher P.
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Chipman, Ariel D.
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Cridge, Andrew G.
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Crumière, Antonin J. J.
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Dearden, Peter K.
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Didion, Elise M.
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Dinh, Huyen
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Doddapaneni, Harsha Vardhan
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Dolan, Amanda
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Dugan, Shannon
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Extavour, Cassandra G.
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Febvay, Gérard
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Friedrich, Markus
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Ginzburg, Neta
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Han, Yi
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Heger, Peter
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Holmes, Christopher J.
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Horn, Thorsten
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Hsiao, Yi Min
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Jennings, Emily C.
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Johnston, J. Spencer
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Jones, Tamsin E.
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Jones, Jeffery W.
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Khila, Abderrahman
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Koelzer, Stefan
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Kovacova, Viera
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Leask, Megan
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Lee, Sandra L.
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Lee, Chien Yueh
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Lovegrove, MacKenzie R.
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Lu, Hsiao Ling
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Lu, Yong
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Moore, Patricia J.
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Munoz-Torres, Monica C.
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Muzny, Donna M.
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Palli, Subba R.
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Parisot, Nicolas
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Pick, Leslie
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Porter, Megan L.
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Qu, Jiaxin
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Refki, Peter N.
dc.contributor.author
Richter, Rose
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Rivera Pomar, Rolando
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dc.contributor.author
Rosendale, Andrew J.
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Roth, Siegfried
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Sachs, Lena
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Santos, M. Emília
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Seibert, Jan
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Sghaier, Essia
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Shukla, Jayendra N.
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Stancliffe, Richard J.
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Tidswell, Olivia
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Traverso, Lucila María
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Van Der Zee, Maurijn
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Viala, Séverine
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Worley, Kim C.
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Zdobnov, Evgeny M.
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Gibbs, Richard A.
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Richards, Stephen
dc.date.available
2021-02-19T16:25:16Z
dc.date.issued
2019-04-02
dc.identifier.citation
Panfilio, Kristen A.; Vargas Jentzsch, Iris M.; Benoit, Joshua B.; Erezyilmaz, Deniz; Suzuki, Yuichiro; et al.; Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome; BioMed Central; Genome Biology; 20; 1; 2-4-2019; 1-26
dc.identifier.issn
1474-7596
dc.identifier.uri
http://hdl.handle.net/11336/126091
dc.description.abstract
Background: The Hemiptera (aphids, cicadas, and true bugs) are a key insect order, with high diversity for feeding ecology and excellent experimental tractability for molecular genetics. Building upon recent sequencing of hemipteran pests such as phloem-feeding aphids and blood-feeding bed bugs, we present the genome sequence and comparative analyses centered on the milkweed bug Oncopeltus fasciatus, a seed feeder of the family Lygaeidae. Results: The 926-Mb Oncopeltus genome is well represented by the current assembly and official gene set. We use our genomic and RNA-seq data not only to characterize the protein-coding gene repertoire and perform isoform-specific RNAi, but also to elucidate patterns of molecular evolution and physiology. We find ongoing, lineage-specific expansion and diversification of repressive C2H2 zinc finger proteins. The discovery of intron gain and turnover specific to the Hemiptera also prompted the evaluation of lineage and genome size as predictors of gene structure evolution. Furthermore, we identify enzymatic gains and losses that correlate with feeding biology, particularly for reductions associated with derived, fluid nutrition feeding. Conclusions: With the milkweed bug, we now have a critical mass of sequenced species for a hemimetabolous insect order and close outgroup to the Holometabola, substantially improving the diversity of insect genomics. We thereby define commonalities among the Hemiptera and delve into how hemipteran genomes reflect distinct feeding ecologies. Given Oncopeltus's strength as an experimental model, these new sequence resources bolster the foundation for molecular research and highlight technical considerations for the analysis of medium-sized invertebrate genomes.
dc.format
application/pdf
dc.language.iso
eng
dc.publisher
BioMed Central
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dc.rights
info:eu-repo/semantics/openAccess
dc.rights.uri
https://creativecommons.org/licenses/by/2.5/ar/
dc.subject
EVOLUTION OF DEVELOPMENT
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GENE FAMILY EVOLUTION
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GENE STRUCTURE
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LATERAL GENE TRANSFER
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PHYTOPHAGY
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RNAI
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TRANSCRIPTION FACTORS
dc.subject.classification
Bioquímica y Biología Molecular
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dc.subject.classification
Ciencias Biológicas
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dc.subject.classification
CIENCIAS NATURALES Y EXACTAS
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dc.title
Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome
dc.type
info:eu-repo/semantics/article
dc.type
info:ar-repo/semantics/artículo
dc.type
info:eu-repo/semantics/publishedVersion
dc.date.updated
2020-11-19T15:48:51Z
dc.identifier.eissn
1474-760X
dc.journal.volume
20
dc.journal.number
1
dc.journal.pagination
1-26
dc.journal.pais
Reino Unido
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dc.journal.ciudad
Londres
dc.description.fil
Fil: Panfilio, Kristen A.. Universitat zu Köln; Alemania. University of Warwick; Reino Unido
dc.description.fil
Fil: Vargas Jentzsch, Iris M.. Universitat zu Köln; Alemania
dc.description.fil
Fil: Benoit, Joshua B.. University of Cincinnati; Estados Unidos
dc.description.fil
Fil: Erezyilmaz, Deniz. Stony Brook University; Estados Unidos. University of Oxford; Reino Unido
dc.description.fil
Fil: Suzuki, Yuichiro. Wellesley College; Estados Unidos
dc.description.fil
Fil: Colella, Stefano. Institut National Des Sciences Appliquées de Lyon; Francia. University of Montpellier. Laboratoire des Symbioses Tropicales et Méditerranéennes; Francia
dc.description.fil
Fil: Robertson, Hugh M.. University of Illinois. Urbana - Champaign; Estados Unidos
dc.description.fil
Fil: Poelchau, Monica F.. National Agricultural Library; Estados Unidos
dc.description.fil
Fil: Waterhouse, Robert M.. Universidad de Ginebra; Suiza. Universite de Lausanne; Suiza
dc.description.fil
Fil: Ioannidis, Panagiotis. Universidad de Ginebra; Suiza
dc.description.fil
Fil: Weirauch, Matthew T.. University of Cincinnati; Estados Unidos
dc.description.fil
Fil: Hughes, Daniel S. T.. Baylor College of Medicine. Department of Human and Molecular Genetics. Human Genome Sequencing Center; Estados Unidos
dc.description.fil
Fil: Murali, Shwetha C.. Baylor College of Medicine. Department of Human and Molecular Genetics. Human Genome Sequencing Center; Estados Unidos. University of Washington. School of Medicine; Estados Unidos. University of Washington. Howard Hughes Medical Institute; Estados Unidos
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Fil: Werren, John H.. University of Rochester; Estados Unidos
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Fil: Jacobs, Chris G. C.. Leiden University; Países Bajos. Instituto Max Planck Institut für Chemische Okologie; Alemania
dc.description.fil
Fil: Duncan, Elizabeth J.. University of Otago; Nueva Zelanda. University of Leeds; Reino Unido
dc.description.fil
Fil: Armisén, David. Université Claude Bernard Lyon 1; Francia
dc.description.fil
Fil: Vreede, Barbara M. I.. The Hebrew University of Jerusalem; Israel
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Fil: Baa-Puyoulet, Patrice. Institut National des Sciences Appliquées de Lyon; Francia
dc.description.fil
Fil: Berger, Chloé S.. Université Claude Bernard Lyon 1; Francia
dc.description.fil
Fil: Chang, Chun Che. National Taiwan University; República de China
dc.description.fil
Fil: Chao, Hsu. Baylor College of Medicine. Department of Human and Molecular Genetics. Human Genome Sequencing Center; Estados Unidos
dc.description.fil
Fil: Chen, Mei Ju M.. National Agricultural Library; Estados Unidos. University of Otago; Nueva Zelanda
dc.description.fil
Fil: Chen, Yen Ta. Universitat zu Köln; Alemania
dc.description.fil
Fil: Childers, Christopher P.. National Agricultural Library; Estados Unidos
dc.description.fil
Fil: Chipman, Ariel D.. The Hebrew University of Jerusalem; Israel
dc.description.fil
Fil: Cridge, Andrew G.. University of Otago; Nueva Zelanda
dc.description.fil
Fil: Crumière, Antonin J. J.. Université Claude Bernard Lyon 1; Francia
dc.description.fil
Fil: Dearden, Peter K.. University of Otago; Nueva Zelanda
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Fil: Didion, Elise M.. University of Cincinnati; Estados Unidos
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Fil: Dinh, Huyen. Baylor College of Medicine. Department of Human and Molecular Genetics. Human Genome Sequencing Center; Estados Unidos
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Fil: Doddapaneni, Harsha Vardhan. Baylor College of Medicine. Department of Human and Molecular Genetics. Human Genome Sequencing Center; Estados Unidos
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Fil: Dolan, Amanda. University of Rochester; Estados Unidos. Rochester Institute of Technology; Estados Unidos
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Fil: Dugan, Shannon. Baylor College of Medicine. Department of Human and Molecular Genetics. Human Genome Sequencing Center; Estados Unidos
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Fil: Extavour, Cassandra G.. Harvard University; Estados Unidos
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Fil: Febvay, Gérard. Institut National des Sciences Appliquées de Lyon; Francia
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Fil: Friedrich, Markus. Wayne State University; Estados Unidos
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Fil: Ginzburg, Neta. The Hebrew University of Jerusalem; Israel
dc.description.fil
Fil: Han, Yi. Baylor College of Medicine. Department of Human and Molecular Genetics. Human Genome Sequencing Center; Estados Unidos
dc.description.fil
Fil: Heger, Peter. Universitat zu Köln; Alemania
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Fil: Holmes, Christopher J.. University of Cincinnati; Estados Unidos
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Fil: Horn, Thorsten. Universitat zu Köln; Alemania
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Fil: Hsiao, Yi Min. National Taiwan University; República de China
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Fil: Jennings, Emily C.. University of Cincinnati; Estados Unidos
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Fil: Johnston, J. Spencer. Texas A&M University; Estados Unidos
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Fil: Jones, Tamsin E.. Harvard University; Estados Unidos
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Fil: Jones, Jeffery W.. Wayne State University; Estados Unidos
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Fil: Khila, Abderrahman. Université Claude Bernard Lyon 1; Francia
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Fil: Koelzer, Stefan. Universitat zu Köln; Alemania
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Fil: Kovacova, Viera. Universitat zu Köln; Alemania
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Fil: Leask, Megan. University of Otago; Nueva Zelanda
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Fil: Lee, Sandra L.. Baylor College of Medicine. Department of Human and Molecular Genetics. Human Genome Sequencing Center; Estados Unidos
dc.description.fil
Fil: Lee, Chien Yueh. National Agricultural Library; Estados Unidos
dc.description.fil
Fil: Lovegrove, MacKenzie R.. University of Otago; Nueva Zelanda
dc.description.fil
Fil: Lu, Hsiao Ling. National Taiwan University; República de China
dc.description.fil
Fil: Lu, Yong. University of Maryland; Estados Unidos
dc.description.fil
Fil: Moore, Patricia J.. University of Georgia; Estados Unidos
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Fil: Munoz-Torres, Monica C.. Lawrence Berkeley National Laboratory; Estados Unidos
dc.description.fil
Fil: Muzny, Donna M.. Baylor College of Medicine. Department of Human and Molecular Genetics. Human Genome Sequencing Center; Estados Unidos
dc.description.fil
Fil: Palli, Subba R.. University of Kentucky; Estados Unidos
dc.description.fil
Fil: Parisot, Nicolas. Institut National Des Sciences Appliquées de Lyon; Francia
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Fil: Pick, Leslie. University of Maryland; Estados Unidos
dc.description.fil
Fil: Porter, Megan L.. University of Hawaii at Manoa; Estados Unidos
dc.description.fil
Fil: Qu, Jiaxin. Baylor College of Medicine. Department of Human and Molecular Genetics. Human Genome Sequencing Center; Estados Unidos
dc.description.fil
Fil: Refki, Peter N.. Université Claude Bernard Lyon 1; Francia. Max Planck Institut für Evolutionsbiologie; Alemania
dc.description.fil
Fil: Richter, Rose. University of Rochester; Estados Unidos. Earthworks Institute; Estados Unidos
dc.description.fil
Fil: Rivera Pomar, Rolando. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Universidad Nacional del Noroeste de la Provincia de Buenos Aires. Centro de Bioinvestigaciones (Sede Pergamino); Argentina
dc.description.fil
Fil: Rosendale, Andrew J.. University of Cincinnati; Estados Unidos
dc.description.fil
Fil: Roth, Siegfried. Universitat zu Köln; Alemania
dc.description.fil
Fil: Sachs, Lena. Universitat zu Köln; Alemania
dc.description.fil
Fil: Santos, M. Emília. Université Claude Bernard Lyon 1; Francia
dc.description.fil
Fil: Seibert, Jan. Universitat zu Köln; Alemania
dc.description.fil
Fil: Sghaier, Essia. Université Claude Bernard Lyon 1; Francia
dc.description.fil
Fil: Shukla, Jayendra N.. University of Kentucky; Estados Unidos. Central University Of Rajasthan; India
dc.description.fil
Fil: Stancliffe, Richard J.. University of Hull; Reino Unido. Universitat Bonn; Alemania
dc.description.fil
Fil: Tidswell, Olivia. University of Cambridge; Estados Unidos. University of Otago; Nueva Zelanda
dc.description.fil
Fil: Traverso, Lucila María. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata; Argentina. Universidad Nacional de La Plata. Centro Regional de Estudios Genómicos; Argentina
dc.description.fil
Fil: Van Der Zee, Maurijn. Leiden University; Países Bajos
dc.description.fil
Fil: Viala, Séverine. Université Claude Bernard Lyon 1; Francia
dc.description.fil
Fil: Worley, Kim C.. Baylor College of Medicine. Department of Human and Molecular Genetics. Human Genome Sequencing Center; Estados Unidos
dc.description.fil
Fil: Zdobnov, Evgeny M.. Universidad de Ginebra; Suiza
dc.description.fil
Fil: Gibbs, Richard A.. Baylor College of Medicine. Department of Human and Molecular Genetics. Human Genome Sequencing Center; Estados Unidos
dc.description.fil
Fil: Richards, Stephen. Baylor College of Medicine. Department of Human and Molecular Genetics. Human Genome Sequencing Center; Estados Unidos
dc.journal.title
Genome Biology
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dc.relation.alternativeid
info:eu-repo/semantics/altIdentifier/url/https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1660-0
dc.relation.alternativeid
info:eu-repo/semantics/altIdentifier/doi/http://dx.doi.org/10.1186/s13059-019-1660-0
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