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dc.contributor.author
Chiapella, Jorge Oscar  
dc.contributor.author
Barfuss, Michael  
dc.contributor.author
Xue, Zhi-Qing  
dc.contributor.author
Greimler, Josef  
dc.date.available
2020-07-15T13:25:28Z  
dc.date.issued
2019-01  
dc.identifier.citation
Chiapella, Jorge Oscar; Barfuss, Michael; Xue, Zhi-Qing; Greimler, Josef; The plastid genome of Deschampsia cespitosa (Poaceae); Molecular Diversity Preservation International; Molecules; 24; 2; 1-2019  
dc.identifier.issn
1420-3049  
dc.identifier.uri
http://hdl.handle.net/11336/109288  
dc.description.abstract
Plastid genome analysis of non-model organisms provides valuable information for basic research e.g., molecular evolutionary genomics, phylogeny and phylogeography. Deschampsia cespitosa is the most widespread species of the genus and it is a common grass that is found across Eurasia and North America. Scattered populations in regions of appropriate ecological conditions are also found in Australia, New Zealand and southern South America, where it is sympatric with D. antarctica. We analyzed the plastid genome of a sample of Deschampsia cespitosa of the Austrian Alps using high-throughput sequencing. The plastid (cp) genome shows the typical quadripartite structure with a length of 135,340 bp, comprising a large single-copy (LSC) region of 79,992 bp, a small single-copy (SSC) region of 12,572 bp and two inverted repeats (IR) regions of 21,388 bp each. It contains 115 genes,including 85 protein-coding genes, four ribosomal RNA genes and 30 transfer RNA genes. The GC content (%), number of repeats and microsatellites, RNA editing sites and codon usage were highly similar to those of D. antarctica. The results of this present study highlight the extremely conserved nature of the cp genome in this group, since the comparison involved individuals separated by about 13,000 km, from the Alps to Antarctica.  
dc.format
application/pdf  
dc.language.iso
eng  
dc.publisher
Molecular Diversity Preservation International  
dc.rights
info:eu-repo/semantics/openAccess  
dc.rights.uri
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/  
dc.subject
DESCHAMPSIA CESPITOSA  
dc.subject
DESCHAMPSIA ANTARCTICA  
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CHLOROPLAST GENOME COMPARISON  
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HIGH-THROUGHPUT SEQUENCING  
dc.subject.classification
Genética y Herencia  
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Ciencias Biológicas  
dc.subject.classification
CIENCIAS NATURALES Y EXACTAS  
dc.title
The plastid genome of Deschampsia cespitosa (Poaceae)  
dc.type
info:eu-repo/semantics/article  
dc.type
info:ar-repo/semantics/artículo  
dc.type
info:eu-repo/semantics/publishedVersion  
dc.date.updated
2020-07-13T16:08:50Z  
dc.identifier.eissn
1420-3049  
dc.journal.volume
24  
dc.journal.number
2  
dc.journal.pais
Suiza  
dc.journal.ciudad
Basel  
dc.description.fil
Fil: Chiapella, Jorge Oscar. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto Multidisciplinario de Biología Vegetal. Universidad Nacional de Córdoba. Facultad de Ciencias Exactas Físicas y Naturales. Instituto Multidisciplinario de Biología Vegetal; Argentina  
dc.description.fil
Fil: Barfuss, Michael. Universidad de Viena. Instituto de Botanica; Austria  
dc.description.fil
Fil: Xue, Zhi-Qing. Universidad de Viena. Instituto de Botanica; Austria  
dc.description.fil
Fil: Greimler, Josef. Universidad de Viena. Instituto de Botanica; Austria  
dc.journal.title
Molecules  
dc.relation.alternativeid
info:eu-repo/semantics/altIdentifier/url/https://www.mdpi.com/1420-3049/24/2/216  
dc.relation.alternativeid
info:eu-repo/semantics/altIdentifier/doi/http://dx.doi.org/10.3390/molecules24020216