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Artículo

Heterochromatin evolution in Arachis investigated through genome-wide analysis of repetitive DNA

Samoluk, Sergio SebastiánIcon ; Chalup, Laura María IsabelIcon ; Chavarro, Carolina; Robledo Dobladez, Germán ArielIcon ; Bertioli, David J.; Jackson, Scott A.; Seijo, José GuillermoIcon
Fecha de publicación: 05/2019
Editorial: Springer
Revista: Planta
ISSN: 0032-0935
e-ISSN: 1432-2048
Idioma: Inglés
Tipo de recurso: Artículo publicado
Clasificación temática:
Genética y Herencia

Resumen

Main conclusion: The most conspicuous difference among chromosomes and genomes in Arachis species, the patterns of heterochromatin, was mainly modeled by differential amplification of different members of one superfamily of satellite DNAs. Divergence in repetitive DNA is a primary driving force for genome and chromosome evolution. Section Arachis is karyotypically diverse and has six different genomes. Arachis glandulifera (D genome) has the most asymmetric karyotype and the highest reproductive isolation compared to the well-known A and B genome species. These features make A. glandulifera an interesting model species for studying the main repetitive components that accompanied the genome and chromosome diversification in the section. Here, we performed a genome-wide analysis of repetitive sequences in A. glandulifera and investigated the chromosome distribution of the identified satellite DNA sequences (satDNAs). LTR retroelements, mainly the Ty3-gypsy families ?Fidel/Feral? and ?Pipoka/Pipa?, were the most represented. Comparative analyses with the A and B genomes showed that many of the previously described transposable elements (TEs) were differently represented in the D genome, and that this variation accompanied changes in DNA content. In addition, four major satDNAs were characterized. Agla_CL8sat was the major component of pericentromeric heterochromatin, while Agla_CL39sat, Agla_CL69sat, and Agla_CL122sat were found in heterochromatic and/or euchromatic regions. Even though Agla_CL8sat belong to a different family than that of the major satDNA (ATR-2) found in the heterochromatin of the A, K, and F genomes, both satDNAs are members of the same superfamily. This finding suggests that closely related satDNAs of an ancestral library were differentially amplified leading to the major changes in the heterochromatin patterns that accompanied the karyotype and genome differentiation in Arachis.
Palabras clave: ARACHIS SPECIES , CHROMOSOME STRUCTURE , GENOME EVOLUTION , REPETITIVE SEQUENCES , SATELLITE DNA
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info:eu-repo/semantics/restrictedAccess Excepto donde se diga explícitamente, este item se publica bajo la siguiente descripción: Creative Commons Attribution-NonCommercial-ShareAlike 2.5 Unported (CC BY-NC-SA 2.5)
Identificadores
URI: http://hdl.handle.net/11336/108225
URL: http://link.springer.com/10.1007/s00425-019-03096-4
DOI: http://dx.doi.org/10.1007/s00425-019-03096-4
Colecciones
Articulos(IBONE)
Articulos de INST.DE BOTANICA DEL NORDESTE (I)
Citación
Samoluk, Sergio Sebastián; Chalup, Laura María Isabel; Chavarro, Carolina; Robledo Dobladez, Germán Ariel; Bertioli, David J.; et al.; Heterochromatin evolution in Arachis investigated through genome-wide analysis of repetitive DNA; Springer; Planta; 249; 5; 5-2019; 1405-1415
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