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dc.contributor.author
Kong, Wenqian
dc.contributor.author
Liu, Min
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Felker, Peter
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Ewens, Mauricio
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Bessega, Cecilia Fabiana
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Pometti, Carolina Luciana
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Wang, Jinpeng
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Xu, Peng
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Teng, Jia
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Wang, Jinyu
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Wang, Xiyin
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Jiao, Yuannian
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Alabady, Magdy S.
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Thibaud Nissen, Françoise
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Masterson, Patrick
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Qiao, Xin
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Paterson, Andrew H.
dc.date.available
2024-02-26T15:02:02Z
dc.date.issued
2023-11
dc.identifier.citation
Kong, Wenqian; Liu, Min; Felker, Peter; Ewens, Mauricio; Bessega, Cecilia Fabiana; et al.; Genome and evolution of Prosopis alba Griseb., a drought and salinity tolerant tree legume crop for arid climates; John Wiley & Sons; Plants People Planet; 5; 6; 11-2023; 933-947
dc.identifier.issn
2572-2611
dc.identifier.uri
http://hdl.handle.net/11336/228426
dc.description.abstract
Societal Impact Statement: Society anticipates a world in which more food and fiber must be produced at warmer temperatures, which, on the contrary, have greater constraints on the use of water and fertilizers. Tree legumes are often the climax vegetation on the semi-arid and arid lands, covering ~25% of the planet, but the knowledge of their genomes is limited. A draft genome sequence for Prosopis alba, a salt and heat tolerant tree that is able to fix nitrogen under harsh conditions, yields new clues about its adaptations. Its rich genetic and ecological diversity makes Prosopis well-suited to the investigation of gene functions important to its own greater utilization and/or the improvement of climate resilience of other crops. Summary: In arid lands that comprise 41% of the Earth's surface and are growing, tree legumes are often the climax vegetation. Now found in much of arid America, Prosopis alba is a salt-tolerant nitrogen-fixing tree native to Argentina. We present a Prosopis alba genome assembly that is 707 Mb in size, comprising of 6087 contigs of up to 2,077,851 bp in length and of ~359.3 Mb (50.8%) being repetitive elements dominated (20.3%) by long terminal repeats (LTR) retrotransposons. Among a total of 57,572 coding sequences (CDS), 42,475 are putative protein coding genes with median length of 2748 bp. The Prosopis alba genome shares the legume-common tetraploidy (LCT) but has not reduplicated, evolving 3.5% and 23.1% faster than Phaseolus vulgaris and Glycine max, respectively, since the LCT. The 50 most expanded gene families include many that are involved in ion homeostasis, perhaps related to drought and/or salt adaptation, together with photosynthetic genes carbonic anhydrase (CA), malate dehydrogenase (MDH) and malic enzyme and gene families involved in circadian clock systems, synthesis of brassinosteroids, auxin and gibberellin. Some expanded gene families include members showing molecular signatures of positive selection, as do numerous multi-copy orthologous groups with features associated with pathogen resistance and single-copy orthogroups related to drought and salt stress response, root and root hair development, nodulation, heavy metal detoxification and stay-green habit. Coupling genomics-based clues about possible causes of its striking physiological adaptations with rich diversity in ecological context offers means to further investigate functional roles of specific Prosopis genes/alleles.
dc.format
application/pdf
dc.language.iso
eng
dc.publisher
John Wiley & Sons
dc.rights
info:eu-repo/semantics/openAccess
dc.rights.uri
https://creativecommons.org/licenses/by-nc/2.5/ar/
dc.subject
COLINEARITY
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NITROGEN FIXATION
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PATHWAYS
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PHOTOSYNTHESIS
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STRESS
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Genética y Herencia
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Ciencias Biológicas
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CIENCIAS NATURALES Y EXACTAS
dc.title
Genome and evolution of Prosopis alba Griseb., a drought and salinity tolerant tree legume crop for arid climates
dc.type
info:eu-repo/semantics/article
dc.type
info:ar-repo/semantics/artículo
dc.type
info:eu-repo/semantics/publishedVersion
dc.date.updated
2024-02-22T11:15:08Z
dc.identifier.eissn
2572-2611
dc.journal.volume
5
dc.journal.number
6
dc.journal.pagination
933-947
dc.journal.pais
Reino Unido
dc.journal.ciudad
Londres
dc.description.fil
Fil: Kong, Wenqian. University of Georgia; Estados Unidos
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Fil: Liu, Min. University of Georgia; Estados Unidos
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Fil: Felker, Peter. Instituto Nacional de Tecnologia Agropecuaria. Centro Regional Tucuman-santiago del Estero. Estacion Experimental Agropecuaria Santiago del Estero. Agencia de Extension Rural Raul Fernandez.; Argentina. Altman Plants; Estados Unidos. Universidad Católica de Santiago del Estero; Argentina
dc.description.fil
Fil: Ewens, Mauricio. Instituto Nacional de Tecnologia Agropecuaria. Centro Regional Tucuman-santiago del Estero. Estacion Experimental Agropecuaria Santiago del Estero. Agencia de Extension Rural Raul Fernandez.; Argentina. Universidad Católica de Santiago del Estero; Argentina
dc.description.fil
Fil: Bessega, Cecilia Fabiana. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Ecología, Genética y Evolución de Buenos Aires. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Ecología, Genética y Evolución de Buenos Aires; Argentina. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Departamento de Ecología, Genética y Evolución; Argentina
dc.description.fil
Fil: Pometti, Carolina Luciana. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Ecología, Genética y Evolución de Buenos Aires. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Ecología, Genética y Evolución de Buenos Aires; Argentina. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Departamento de Ecología, Genética y Evolución; Argentina
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Fil: Wang, Jinpeng. North China University of Science and Technology; China. Chinese Academy of Sciences; República de China. Agriculture University of Hebei; China
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Fil: Xu, Peng. Chinese Academy of Sciences; República de China
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Fil: Teng, Jia. North China University of Science and Technology; China
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Fil: Wang, Jinyu. North China University Of Science And Technology; China. Agriculture University of Hebei; China
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Fil: Wang, Xiyin. North China University Of Science And Technology; China
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Fil: Jiao, Yuannian. Chinese Academy of Sciences; República de China
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Fil: Alabady, Magdy S.. University of Georgia; Estados Unidos
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Fil: Thibaud Nissen, Françoise. National Institutes of Health; Estados Unidos
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Fil: Masterson, Patrick. National Institutes of Health; Estados Unidos
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Fil: Qiao, Xin. Nanjing Agricultural University; China
dc.description.fil
Fil: Paterson, Andrew H.. University of Georgia; Estados Unidos. North China University Of Science And Technology; China
dc.journal.title
Plants People Planet
dc.relation.alternativeid
info:eu-repo/semantics/altIdentifier/url/https://nph.onlinelibrary.wiley.com/doi/10.1002/ppp3.10404
dc.relation.alternativeid
info:eu-repo/semantics/altIdentifier/doi/http://dx.doi.org/10.1002/ppp3.10404
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