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dc.contributor.author
Caspi, Ron
dc.contributor.author
Billington, Richard
dc.contributor.author
Ferrer, Luciana
dc.contributor.author
Foerster, Hartmut
dc.contributor.author
Fulcher, Carol A.
dc.contributor.author
Keseler, Ingrid M.
dc.contributor.author
Kothari, Anamika
dc.contributor.author
Krummenacker, Markus
dc.contributor.author
Latendresse, Mario
dc.contributor.author
Mueller, Lukas A.
dc.contributor.author
Ong, Quang
dc.contributor.author
Paley, Suzanne
dc.contributor.author
Subhraveti, Pallavi
dc.contributor.author
Weaver, Daniel S.
dc.contributor.author
Karp, Peter D.
dc.date.available
2019-10-08T20:56:38Z
dc.date.issued
2016-01
dc.identifier.citation
Caspi, Ron; Billington, Richard; Ferrer, Luciana; Foerster, Hartmut; Fulcher, Carol A.; et al.; The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases; Oxford University Press; Nucleic Acids Research; 44; D1; 1-2016; D471-D480
dc.identifier.issn
0305-1048
dc.identifier.uri
http://hdl.handle.net/11336/85389
dc.description.abstract
The MetaCyc database (MetaCyc.org) is a freely accessible comprehensive database describing metabolic pathways and enzymes from all domains of life. The majority of MetaCyc pathways are small-molecule metabolic pathways that have been experimentally determined. MetaCyc contains more than 2400 pathways derived from >46 000 publications, and is the largest curated collection of metabolic pathways. BioCyc (BioCyc.org) is a collection of 5700 organism-specific Pathway/Genome Databases (PGDBs), each containing the full genome and predicted metabolic network of one organism, including metabolites, enzymes, reactions, metabolic pathways, predicted operons, transport systems, and pathway-hole fillers. The BioCyc website offers a variety of tools for querying and analyzing PGDBs, including Omics Viewers and tools for comparative analysis. This article provides an update of new developments in MetaCyc and BioCyc during the last two years, including addition of Gibbs free energy values for compounds and reactions; redesign of the primary gene/protein page; addition of a tool for creating diagrams containing multiple linked pathways; several new search capabilities, including searching for genes based on sequence patterns, searching for databases based on an organism's phenotypes, and a cross-organism search; and a metabolite identifier translation service.
dc.format
application/pdf
dc.language.iso
eng
dc.publisher
Oxford University Press
dc.rights
info:eu-repo/semantics/openAccess
dc.rights.uri
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.subject
METABOLIC PATHWAYS
dc.subject
ENZYMES
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DATABASE
dc.subject
GENOME
dc.subject.classification
Ciencias de la Información y Bioinformática
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Ciencias de la Computación e Información
dc.subject.classification
CIENCIAS NATURALES Y EXACTAS
dc.title
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
dc.type
info:eu-repo/semantics/article
dc.type
info:ar-repo/semantics/artículo
dc.type
info:eu-repo/semantics/publishedVersion
dc.date.updated
2019-10-04T18:38:24Z
dc.identifier.eissn
1362-4962
dc.journal.volume
44
dc.journal.number
D1
dc.journal.pagination
D471-D480
dc.journal.pais
Reino Unido
dc.journal.ciudad
Oxford
dc.description.fil
Fil: Caspi, Ron. SRI International; Estados Unidos
dc.description.fil
Fil: Billington, Richard. SRI International; Estados Unidos
dc.description.fil
Fil: Ferrer, Luciana. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
dc.description.fil
Fil: Foerster, Hartmut. Boyce Thompson Institute for Plant Research; Estados Unidos
dc.description.fil
Fil: Fulcher, Carol A.. SRI International; Estados Unidos
dc.description.fil
Fil: Keseler, Ingrid M.. SRI International; Estados Unidos
dc.description.fil
Fil: Kothari, Anamika. SRI International; Estados Unidos
dc.description.fil
Fil: Krummenacker, Markus. SRI International; Estados Unidos
dc.description.fil
Fil: Latendresse, Mario. SRI International; Estados Unidos
dc.description.fil
Fil: Mueller, Lukas A.. Boyce Thompson Institute for Plant Research; Estados Unidos
dc.description.fil
Fil: Ong, Quang. SRI International; Estados Unidos
dc.description.fil
Fil: Paley, Suzanne. SRI International; Estados Unidos
dc.description.fil
Fil: Subhraveti, Pallavi. SRI International; Estados Unidos
dc.description.fil
Fil: Weaver, Daniel S.. SRI International; Estados Unidos
dc.description.fil
Fil: Karp, Peter D.. SRI International; Estados Unidos
dc.journal.title
Nucleic Acids Research
dc.relation.alternativeid
info:eu-repo/semantics/altIdentifier/doi/http://dx.doi.org/10.1093/nar/gkv1164
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