---- Tables ----
Supplementary Table S09 - Mapping of CHAGASTOPE-v1 data to T cruzi proteins.zip
	TSV file containing the detailed information to map each peptide in 
	CHAGASTOPE-v1 microarray to their original spots in each protein of 
	T. cruzi in this array.

Supplementary Table S10 - Mapping of CHAGASTOPE-v2 data to T cruzi proteins.zip
	TSV file containing the detailed information to map each peptide in 
	CHAGASTOPE-2 microarray to their original spots in each protein of 
	T. cruzi in this array.

Supplementary Table S11 - Detailed antigenic region analysis for pooled serums.zip
	TSV file containing the detailed information for all the antigenic regions 
	found in CHAGASTOPE-v1 and their respective antigenicity in the pooled serums.

Supplementary Table S12 - Detailed antigenic region analysis for individual serums.zip
	TSV file containing the detailed information for all the antigenic regions 
	found in CHAGASTOPE-v1 and their respective antigenicity in the individual serums.

---- Files ----
Supplementary File S01 - CHAGASTOPE-v1 - Positive controls.pdf
	ZIP file containing a PDF with the protein profiles for the positive controls 
	analyzed in CHAGASTOPE-v1, showing their antigenicity in the pooled serums.

Supplementary File S02 - CHAGASTOPE-v1 - Profiles for proteins above 3SD.zip
	ZIP file containing 3 PDF files with the protein profiles for the proteins in 
	both T.cruzi proteomes analyzed in CHAGASTOPE-v1, showing their antigenicity in 
	the pooled serums. Only proteins that had at least one peptide above an
	antigenicity threshold of mode + 3 standard deviations are shown.

Supplementary File S03 - CHAGASTOPE-v2 - Profiles for proteins above 2.4SD.zip
	ZIP file containing a PDF with the squashed protein profiles for the 
	antigenic regions analyzed in CHAGASTOPE-v2, showing their antigenicity in 
	the individual serums.

Supplementary File S04 - CHAGASTOPE-v2 - Profiles for regions above 2.4SD.zip
	ZIP file containing a PDF with the squashed region profiles for the 
	antigenic regions analyzed in CHAGASTOPE-v2, showing their antigenicity in 
	the individual serums.

Supplementary File S05a - CHAGASTOPE-v1 - Smoothed Signals.zip
Supplementary File S05b - CHAGASTOPE-v2 - Smoothed Signals.zip
	2 ZIP files containing several TSV files (one per serum) with the parsed signal data
	(normalized and then smoothed) for each peptide in each protein in CHAGASTOPE-v1 and 
	CHAGASTOPE-v2.

Supplementary File S06 - Detailed Alanine Scan for Ag2 antigen.pdf
	PDF file containing the detailed scheme of single residue mutational scanning of 
	CA-2/Ag2 Antigen (TcCLB.508831.140) alongside results for one serum as example.

Supplementary File S07 - Alanine Scan general results.pdf
	PDF file with a summary of the single residue mutational scanning experiment 
	results for each antigen. It shows a heatmap with residue relevance for all 
	sera and 4 sequence logos (one for all positive sera and 3 other individual examples). 

Supplementary File S08 - Alanine Scan results for repeats.pdf
	PDF file with single-residue mutagenesis of repetitive T. cruzi antigens and 
	their multiple sequence alignment identified by Xstream output (Tandem repeat 
	patterns identification, AM Newman 2007).